Genomic Location: Ap4:49448363...49449734
NR annotation: XP_020622919.1, uncharacterized protein LOC110060475 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families
| CDS |
| evm.model.Ap4.6488 |
| Transcript |
| evm.model.Ap4.6488 |
| Protein |
| evm.model.Ap4.6488 |
| UniProt accession | Description |
|---|---|
| Q7Z5N4 | Protein sidekick-1 OS=Homo sapiens OX=9606 GN=SDK1 PE=1 SV=3 |
| Q3UH53 | Protein sidekick-1 OS=Mus musculus OX=10090 GN=Sdk1 PE=1 SV=1 |
| P98160 | Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens OX=9606 GN=HSPG2 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000058 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| PF07679 all species → | I-set | Immunoglobulin I-set domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| IPR050632 all species → | Family | Nematode Cuticular Collagen | Interproscan |
| IPR007110 all species → | Domain | Immunoglobulin-like domain | Interproscan |
| IPR013098 all species → | Domain | Immunoglobulin I-set | Interproscan |
| IPR003599 all species → | Domain | Immunoglobulin subtype | Interproscan |
| IPR013783 all species → | Homologous_superfamily | Immunoglobulin-like fold | Interproscan |
| IPR003598 all species → | Domain | Immunoglobulin subtype 2 | Interproscan |
| IPR036179 all species → | Homologous_superfamily | Immunoglobulin-like domain superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR24637 all species → | COLLAGEN | Interproscan |
evm.model.Ap4.6488. This gene does have a gene model — the search simply returned no hit.evm.model.Ap4.6488.
