Detailed information of evm.model.Ap4.6489 in Astrangia poculata

Genomic Location: Ap4:49472394...49473628
NR annotation: XP_020622919.1, uncharacterized protein LOC110060475 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q2EY14Protogenin A OS=Danio rerio OX=7955 GN=prtga PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000058 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07679
all species →		I-setImmunoglobulin I-set domainDomainInterproscan
PF01391
all species →		CollagenCollagen triple helix repeat (20 copies)RepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR013098
all species →		DomainImmunoglobulin I-setInterproscan
IPR008160
all species →		RepeatCollagen triple helix repeatInterproscan
IPR050632
all species →		FamilyNematode Cuticular CollagenInterproscan
IPR003599
all species →		DomainImmunoglobulin subtypeInterproscan
IPR007110
all species →		DomainImmunoglobulin-like domainInterproscan
IPR036179
all species →		Homologous_superfamilyImmunoglobulin-like domain superfamilyInterproscan
IPR003598
all species →		DomainImmunoglobulin subtype 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24637
all species →		COLLAGENInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap4.6489. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.6489.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
TOP