Gene detail

Detailed information of evm.model.Ap4.6525 in Astrangia poculata

Genomic Location: Ap4:49872920...49891808
NR annotation: KAJ7360430.1, hypothetical protein OS493_015531 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6525

atgagagtcgattacggggacattgatattggtttcttttcctttgaatctttcaggttctccttaattcacaaaacaggaaccccatgcactgccatttccttttgtctgcggagaaaaaatgaagtgttggtagctcttgctgataattctttaagatgttatgatacagaatctcatgagttagtgagctggatgagaggtcatgactcagccattcacagtatatcagtccatgcttcaggacgctacgcactaacttcatcaaactctgtagctcaattgtgggacctggacacattttctcgcaaaaggacattaaatggagctcagactgttggaatccagcaggttctcttcttaccactaagcaataccgtagtatcatgtttcaaagatgacagcctgtttgtgtgggattcggaaacactgaagtgtaaatttcagttgcctgttccacctgaagaggctaaacagccccattacagagcattagcaactccgagagatggacggttacttgtggctggaggaaggtctcgttttcttcatgtatggagtctggagaacaagcgtctgctccatgttattcagcttccagcaagagtgcgacttgtcaggcaactggaatttataagcaacagttttgatggagggagcagtcagacccttgctgtgctgtctcaagatggcattctgcgttttattgacatccatgcttgcaaacagctgtttgaaattggaggtgctgacgagatgattaacaacttcagcatcagttcaaatggccgatatgtcgcagctgtaatggacaatggtaacatcaatgtttacagtgtccctgcactgtcacaacattttaccaagccacctccaccattggttaaaactgtgtgggaagagagaccgctgtcccagcaaggcggcaaatctggtcggtctctaggaagtgccatgactaaagttggaggaacaccaaaaaggaacaaagctaaatcaccagcaagaacacatactcaaaatgttgacgtgtctgcatcttggacaagtccagactcaggtcttgagacagaactaccagaaggcctcaatcaagctaggctaaagtcaattctacaaggctatggagagtatcctgctaaatacagaatgtttatttggcgatcacttctcaaacttcctgagaaccatgcagcttacagcagcttggtggacaaagggactcacaatgcttttgcgaggctccacgaagaatatccaataaaaagtagaaaactgttaagagttttacagagaacgttatcagcgttagctcactggtcagccatatttggtgaagtagattacctggctcttctgtcctttcctttcgtcaaactgttccagaacaatcagctgatctgttttgagatgatagcaacaatcatgataaattggtgtcagcactggtttgaattttttcctaaccctcctgtgaacattcttggtatggtggagaatgtgttggtacatcatgataaaagactcatgcagcactttgtcagctgtaatgtcacatcacagttgtatgcctggccattgctacagacgctgttatctgaagttctaaccaaggaggagtggctcagagcttgggataacattttttccaatcatcctgcattccttgtttttgttgtggtcgcctatgctattgtgtcacgcaaagctctgctgcagtgtacaagaaaagaggactttgagtactactttcataaccggaatgcggtggaggttggtacggtcatccgtgaagcttaccgcttgcaggacagtaccccagcagaagtgaaccccaagaggatgctagaaccgttcgttccactgacgagaggacagtaccccatcttcaacaaataccccaagtttattgtggattatcaggtccaagaaagggagagaatccggcaggaggaattggaatatttaagacaaagacaactggcgcaggagatgaaggaagtagcagctcagcgacagcaagaagaagaagcgttctatcgacagcaagagctgatggtagacgctgagaatcagaggagagcgatgataggccaagaagaacaaaaactcacagatcagagaagcagattgcaggcaatgaagcgagaaattcatctgcgagaactacagctgctggacgctgttcgcagacgcttcatgcatcaccagcagacactgaaagagacagagatacaaagacttgatgacgaaatagaacgcaaggcattgcttagagagcaagaaacaagacttgccatggaagacgctgaaataaagggactggagcttcaagcacaaaaagaaatgcttcaacaggatttgattcgcgatgagctccagagttcgttcaagcagcgatcagaacaaacgatccagcggaaacaacaagaactggaagaacaattgttcaaaagaacaatagacgccgtgcaggaggtggacattgaatcacaaagggtctctcaggaggagttagctaaggctcaacagaagcacgcttctgttaacttggaagaagaggtggaattaagaacacgaatggacgatctccacagagagctaaatgaagtgaagaatgacgaagtggctagaaaacaatctgagctaagacgagagaaagctatcgccgctgaagaggaaagaagacgtatgaatctgttaaacgctctgtcacgagatcgtgtcttgaccagtgatgattcggagtcattctctcgtctaagggacattcgtcaagtaccgggtgaggccagaagaccgttaagtgctattaaacccagtagcacagaaagcagtgcaacaacggactgggactcgagcggaactccaatttcttctcaagaaccctcactagaacgtcagcgaggaacttttgaaaagcgtgaactggaacttatggctgaagttagagatctcagaaaacgacttgctgccaggagacaacaacgtccacctgactttatgggaaatacagcgcaacaataa

Transcript

evm.model.Ap4.6525

ATGAGAGTCGATTACGGGGACATTGATATTGGTTTCTTTTCCTTTGAATCTTTCAGGTTCTCCTTAATTCACAAAACAGGAACCCCATGCACTGCCATTTCCTTTTGTCTGCGGAGAAAAAATGAAGTGTTGGTAGCTCTTGCTGATAATTCTTTAAGATGTTATGATACAGAATCTCATGAGTTAGTGAGCTGGATGAGAGGTCATGACTCAGCCATTCACAGTATATCAGTCCATGCTTCAGGACGCTACGCACTAACTTCATCAAACTCTGTAGCTCAATTGTGGGACCTGGACACATTTTCTCGCAAAAGGACATTAAATGGAGCTCAGACTGTTGGAATCCAGCAGGTTCTCTTCTTACCACTAAGCAATACCGTAGTATCATGTTTCAAAGATGACAGCCTGTTTGTGTGGGATTCGGAAACACTGAAGTGTAAATTTCAGTTGCCTGTTCCACCTGAAGAGGCTAAACAGCCCCATTACAGAGCATTAGCAACTCCGAGAGATGGACGGTTACTTGTGGCTGGAGGAAGGTCTCGTTTTCTTCATGTATGGAGTCTGGAGAACAAGCGTCTGCTCCATGTTATTCAGCTTCCAGCAAGAGTGCGACTTGTCAGGCAACTGGAATTTATAAGCAACAGTTTTGATGGAGGGAGCAGTCAGACCCTTGCTGTGCTGTCTCAAGATGGCATTCTGCGTTTTATTGACATCCATGCTTGCAAACAGCTGTTTGAAATTGGAGGTGCTGACGAGATGATTAACAACTTCAGCATCAGTTCAAATGGCCGATATGTCGCAGCTGTAATGGACAATGGTAACATCAATGTTTACAGTGTCCCTGCACTGTCACAACATTTTACCAAGCCACCTCCACCATTGGTTAAAACTGTGTGGGAAGAGAGACCGCTGTCCCAGCAAGGCGGCAAATCTGGTCGGTCTCTAGGAAGTGCCATGACTAAAGTTGGAGGAACACCAAAAAGGAACAAAGCTAAATCACCAGCAAGAACACATACTCAAAATGTTGACGTGTCTGCATCTTGGACAAGTCCAGACTCAGGTCTTGAGACAGAACTACCAGAAGGCCTCAATCAAGCTAGGCTAAAGTCAATTCTACAAGGCTATGGAGAGTATCCTGCTAAATACAGAATGTTTATTTGGCGATCACTTCTCAAACTTCCTGAGAACCATGCAGCTTACAGCAGCTTGGTGGACAAAGGGACTCACAATGCTTTTGCGAGGCTCCACGAAGAATATCCAATAAAAAGTAGAAAACTGTTAAGAGTTTTACAGAGAACGTTATCAGCGTTAGCTCACTGGTCAGCCATATTTGGTGAAGTAGATTACCTGGCTCTTCTGTCCTTTCCTTTCGTCAAACTGTTCCAGAACAATCAGCTGATCTGTTTTGAGATGATAGCAACAATCATGATAAATTGGTGTCAGCACTGGTTTGAATTTTTTCCTAACCCTCCTGTGAACATTCTTGGTATGGTGGAGAATGTGTTGGTACATCATGATAAAAGACTCATGCAGCACTTTGTCAGCTGTAATGTCACATCACAGTTGTATGCCTGGCCATTGCTACAGACGCTGTTATCTGAAGTTCTAACCAAGGAGGAGTGGCTCAGAGCTTGGGATAACATTTTTTCCAATCATCCTGCATTCCTTGTTTTTGTTGTGGTCGCCTATGCTATTGTGTCACGCAAAGCTCTGCTGCAGTGTACAAGAAAAGAGGACTTTGAGTACTACTTTCATAACCGGAATGCGGTGGAGGTTGGTACGGTCATCCGTGAAGCTTACCGCTTGCAGGACAGTACCCCAGCAGAAGTGAACCCCAAGAGGATGCTAGAACCGTTCGTTCCACTGACGAGAGGACAGTACCCCATCTTCAACAAATACCCCAAGTTTATTGTGGATTATCAGGTCCAAGAAAGGGAGAGAATCCGGCAGGAGGAATTGGAATATTTAAGACAAAGACAACTGGCGCAGGAGATGAAGGAAGTAGCAGCTCAGCGACAGCAAGAAGAAGAAGCGTTCTATCGACAGCAAGAGCTGATGGTAGACGCTGAGAATCAGAGGAGAGCGATGATAGGCCAAGAAGAACAAAAACTCACAGATCAGAGAAGCAGATTGCAGGCAATGAAGCGAGAAATTCATCTGCGAGAACTACAGCTGCTGGACGCTGTTCGCAGACGCTTCATGCATCACCAGCAGACACTGAAAGAGACAGAGATACAAAGACTTGATGACGAAATAGAACGCAAGGCATTGCTTAGAGAGCAAGAAACAAGACTTGCCATGGAAGACGCTGAAATAAAGGGACTGGAGCTTCAAGCACAAAAAGAAATGCTTCAACAGGATTTGATTCGCGATGAGCTCCAGAGTTCGTTCAAGCAGCGATCAGAACAAACGATCCAGCGGAAACAACAAGAACTGGAAGAACAATTGTTCAAAAGAACAATAGACGCCGTGCAGGAGGTGGACATTGAATCACAAAGGGTCTCTCAGGAGGAGTTAGCTAAGGCTCAACAGAAGCACGCTTCTGTTAACTTGGAAGAAGAGGTGGAATTAAGAACACGAATGGACGATCTCCACAGAGAGCTAAATGAAGTGAAGAATGACGAAGTGGCTAGAAAACAATCTGAGCTAAGACGAGAGAAAGCTATCGCCGCTGAAGAGGAAAGAAGACGTATGAATCTGTTAAACGCTCTGTCACGAGATCGTGTCTTGACCAGTGATGATTCGGAGTCATTCTCTCGTCTAAGGGACATTCGTCAAGTACCGGGTGAGGCCAGAAGACCGTTAAGTGCTATTAAACCCAGTAGCACAGAAAGCAGTGCAACAACGGACTGGGACTCGAGCGGAACTCCAATTTCTTCTCAAGAACCCTCACTAGAACGTCAGCGAGGAACTTTTGAAAAGCGTGAACTGGAACTTATGGCTGAAGTTAGAGATCTCAGAAAACGACTTGCTGCCAGGAGACAACAACGTCCACCTGACTTTATGGGAAATACAGCGCAACAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DDI6	TBC1 domain family member 31 OS=Xenopus laevis OX=8355 GN=tbc1d31 PE=2 SV=1
Q6DEY8	TBC1 domain family member 31 OS=Xenopus tropicalis OX=8364 GN=tbc1d31 PE=2 SV=1
Q96DN5	TBC1 domain family member 31 OS=Homo sapiens OX=9606 GN=TBC1D31 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004127 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF00566 all species →	RabGAP-TBC	Rab-GTPase-TBC domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR000195 all species →	Domain	Rab-GAP-TBC domain	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR035969 all species →	Homologous_superfamily	Rab-GAP-TBC domain superfamily	Interproscan
IPR051570 all species →	Family	TBC1 domain family involved in cilium biogenesis	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19853 all species →	WD REPEAT CONTAINING PROTEIN 3 WDR3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6525.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.