Gene detail

Detailed information of evm.model.Ap4.6534 in Astrangia poculata

Genomic Location: Ap4:49950600...49962736
NR annotation: XP_020609602.1, LOW QUALITY PROTEIN: rhophilin-2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6534

atgattcccgtatcaactgaacttgaaatggcggaaaaccggcgcgaagcgggaactgatctcctcaaaaccgaccgtgggaaaacgcttgaagtggatgatagtgagcttggctctcggaagacgtccgctcgatggaagctacagcacaaaagacaagttttaaatcacaaaatatttaagcagaccaagttacgagacggagcagaaaatttaatgaaagccttaaggataacaaatgacaggaaaacaaagcttgctgctaagacagagttaagttttgctaactcacaactggatttgttgaaggaggaacttgaaggaattaacagcaccctggatgtttatcagtttgataggagtgttgagcaccagattccattgattgctgttggtctcagggaaacaaaagagcttgtttttaaacctcaatttaaggactttattttggaacattatagtgactctccagtaaattatgaaaaagagcttgagctatttgaaaatctgagaaaggaggctgtgagtaaggccaacagagatgagacaggtatccatgctttgttcagctactacaatcaactgtactttgtggagaagaaattctttcccaagggaaaaggatacatcatgcctgtttattttcattggtatgataccacaactggtttaccaaaagtacagcgagctgtcgcatttgaaaaggctagcattctctttaacattggttctgtctggagtcaaattggtgcaaaacaagacagaagaacacaagctgggcttagtgtggccattgatgcattccagaaagctgcaggcattttcaaatttatcaaagacaactttgtcaactctccaagtgctgacttgacaccagaagtaatggaaatgctaaaggctgttatgctggctcaggcacagttgtgtatgtgggaagagtgcttccttgaaggaataaaagataagttgtcagacaagataagtgcagctcaggagtgtgttgaggttagtcagcggtacaaaaaggcccagatgatgatgaattctggaatttgcttaagttgtgttccattgtcttggaaaaacatgatgtcgataatgagtcttcactacaaagctttgtcacattactttgttgctgatggaattcttaaaagtgttgagagttccagcaatgacaagcaagaagaaactgtgatttcttctttagacacatctcagccagatgatagtgcaaccagaaacaagcaagcaaaagcgcacctccattcagcactgaaatcacatgaagaagccatgaaagctagacagatctgtcggcactgtagaaaaatagtaggattacaaaaggctcttcaagatgctcgcatcaaaacaactgacacattagttgccatggaagaagaagatgattttgatgatcctttgacaccaacccctgtcaaagctttagcaagacaaagagcagattgtgttccacccaattttaaccaagcttcagtagaggacttgtttcatagactgggtcctgtacatgtgttcaatgcaaatttagaatggaatgtaccacggagtatcacgctaaagagaagtaacggagggtatggcttcagtgttattggctctgctcctgttattattcagagtgtggaagaaagaggacctgccaaggatgctggaattcaagtaggggatattataacttctgtgaatgagacagactgcaaatggggtgatcatccttttgtggtgtcgttaattcgcaatactgatgcttctgtgacacttgatattgtaacgccatgctctctcaaggacattgcttcattatacaatgtcaaactgtccagggaggatcacgttgtgactagtgactatagtggctctattgggagtcagagctctgcgtcgtccagaaacagcactcttaatggattatactccaaatcaagcagcaattcatctggctcaacaagatctagcactccgtctcgacacagttctgtgttggaaatggggaatgagtcgattctgtggtag

Transcript

evm.model.Ap4.6534

ATGATTCCCGTATCAACTGAACTTGAAATGGCGGAAAACCGGCGCGAAGCGGGAACTGATCTCCTCAAAACCGACCGTGGGAAAACGCTTGAAGTGGATGATAGTGAGCTTGGCTCTCGGAAGACGTCCGCTCGATGGAAGCTACAGCACAAAAGACAAGTTTTAAATCACAAAATATTTAAGCAGACCAAGTTACGAGACGGAGCAGAAAATTTAATGAAAGCCTTAAGGATAACAAATGACAGGAAAACAAAGCTTGCTGCTAAGACAGAGTTAAGTTTTGCTAACTCACAACTGGATTTGTTGAAGGAGGAACTTGAAGGAATTAACAGCACCCTGGATGTTTATCAGTTTGATAGGAGTGTTGAGCACCAGATTCCATTGATTGCTGTTGGTCTCAGGGAAACAAAAGAGCTTGTTTTTAAACCTCAATTTAAGGACTTTATTTTGGAACATTATAGTGACTCTCCAGTAAATTATGAAAAAGAGCTTGAGCTATTTGAAAATCTGAGAAAGGAGGCTGTGAGTAAGGCCAACAGAGATGAGACAGGTATCCATGCTTTGTTCAGCTACTACAATCAACTGTACTTTGTGGAGAAGAAATTCTTTCCCAAGGGAAAAGGATACATCATGCCTGTTTATTTTCATTGGTATGATACCACAACTGGTTTACCAAAAGTACAGCGAGCTGTCGCATTTGAAAAGGCTAGCATTCTCTTTAACATTGGTTCTGTCTGGAGTCAAATTGGTGCAAAACAAGACAGAAGAACACAAGCTGGGCTTAGTGTGGCCATTGATGCATTCCAGAAAGCTGCAGGCATTTTCAAATTTATCAAAGACAACTTTGTCAACTCTCCAAGTGCTGACTTGACACCAGAAGTAATGGAAATGCTAAAGGCTGTTATGCTGGCTCAGGCACAGTTGTGTATGTGGGAAGAGTGCTTCCTTGAAGGAATAAAAGATAAGTTGTCAGACAAGATAAGTGCAGCTCAGGAGTGTGTTGAGGTTAGTCAGCGGTACAAAAAGGCCCAGATGATGATGAATTCTGGAATTTGCTTAAGTTGTGTTCCATTGTCTTGGAAAAACATGATGTCGATAATGAGTCTTCACTACAAAGCTTTGTCACATTACTTTGTTGCTGATGGAATTCTTAAAAGTGTTGAGAGTTCCAGCAATGACAAGCAAGAAGAAACTGTGATTTCTTCTTTAGACACATCTCAGCCAGATGATAGTGCAACCAGAAACAAGCAAGCAAAAGCGCACCTCCATTCAGCACTGAAATCACATGAAGAAGCCATGAAAGCTAGACAGATCTGTCGGCACTGTAGAAAAATAGTAGGATTACAAAAGGCTCTTCAAGATGCTCGCATCAAAACAACTGACACATTAGTTGCCATGGAAGAAGAAGATGATTTTGATGATCCTTTGACACCAACCCCTGTCAAAGCTTTAGCAAGACAAAGAGCAGATTGTGTTCCACCCAATTTTAACCAAGCTTCAGTAGAGGACTTGTTTCATAGACTGGGTCCTGTACATGTGTTCAATGCAAATTTAGAATGGAATGTACCACGGAGTATCACGCTAAAGAGAAGTAACGGAGGGTATGGCTTCAGTGTTATTGGCTCTGCTCCTGTTATTATTCAGAGTGTGGAAGAAAGAGGACCTGCCAAGGATGCTGGAATTCAAGTAGGGGATATTATAACTTCTGTGAATGAGACAGACTGCAAATGGGGTGATCATCCTTTTGTGGTGTCGTTAATTCGCAATACTGATGCTTCTGTGACACTTGATATTGTAACGCCATGCTCTCTCAAGGACATTGCTTCATTATACAATGTCAAACTGTCCAGGGAGGATCACGTTGTGACTAGTGACTATAGTGGCTCTATTGGGAGTCAGAGCTCTGCGTCGTCCAGAAACAGCACTCTTAATGGATTATACTCCAAATCAAGCAGCAATTCATCTGGCTCAACAAGATCTAGCACTCCGTCTCGACACAGTTCTGTGTTGGAAATGGGGAATGAGTCGATTCTGTGGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63ZR5	Rhophilin-2-B OS=Xenopus laevis OX=8355 GN=rhpn2-b PE=2 SV=1
Q8IUC4	Rhophilin-2 OS=Homo sapiens OX=9606 GN=RHPN2 PE=1 SV=1
Q6TNR1	Rhophilin-2 OS=Danio rerio OX=7955 GN=rhpn2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007500 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF02185 all species →	HR1	Hr1 repeat	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011072 all species →	Domain	HR1 rho-binding domain	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR036274 all species →	Homologous_superfamily	HR1 repeat superfamily	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR047138 all species →	Family	Rhophilin-1/2	Interproscan
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23031 all species →	RHOPHILIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0051497 all species →	Biological Process	negative regulation of stress fiber assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6534.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.