Gene detail

Detailed information of evm.model.Ap4.6643 in Astrangia poculata

Genomic Location: Ap4:51086645...51089107
NR annotation: KAJ7360461.1, ATP-binding cassette sub- B member 9 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6643

atggcgcgttgctttcgttgccgcggtttggtaaaaccactctttatctgcatatcaggagctcttttggacgtcttactatctggcgtgttacttattcatggcaagaacatctcctcgttcagtgaacattcacaagtggaagacttcaaattttgctcgtctgtttttgatttgtggattttatcgttgatacgttcatgtgcattattgggtgccacttttggactgttgtttgctaaacgcaagatggacgctgtttccaaaattattcaattcaagaagccttggctttattatagcattggcgtcgtggtcttcgttgtagtaaagtttctgctcagtaaagaatgcagcttggacaaaaactccaagatttggcagtggtgttatatgggatggactgtgggaagtacattcatggcaaatggtctctggtacttgctttctaaaattaaagtactgggcatgtctacagaacatgaaattggcttaatacaagaacgagagagtctccttgatgttggtgattttaattattcagatggtgcccctagtgacgaaaaccagaccaaaaaagagcacgaaagtaccatttctgcttggagacttatgtcatattgtaaaccggatattcctcacatttcattggcatctttgttccttttgctagcagcaaatggtgaaatcttcattccctattatactgggcaagttatagacagcatcgcaattgagaaggacaaggctaaatttatgacttccattctcataatgacactgatttcgctgggtacagctattgctgctggtttgcgaggtggtatgtttactttaattgctgcaaggtttaccaaaagaatcagcaaccttttatttggctcaattgtaaagcaagaaattggatttttcgacagcacaaaaactggtgatatagtctcacgtctgacctctgacacaacaaaaatgtctgatcaagttggattgaacattaatgtattccttcgtaattgcgtccaatccattggaacatgtgtctttatgtttaaactctcatggaagttaaccattgttactttgattggtcttcctcttgtcgcatttatttcggacatttatggagaatactacaagaaactgtcaacacaggtgcaagaagcaactgccaaagcaaacgaaattgctgcagaagttgtctcttccatgaagactgttcgcagctttgcaaatgaagatggtgaatacaagcgttatgagaacaaacaagaagctatatataaactcagaatcaaggaatcatttctctacggaggctacagatggtgtacagaaatccttgctcttgccctcgacgttgtagtccttctttatggtggtcatttagtacttgaaggagagctcagtggaggctacctagtttcctttatattgtaccagttgcaacttagtttctacattgatgaagttggtgagatttacacaggtcttatggaagctgtgggtgcttctcagaaggtatttgagcttattgatcgcaagcctaaaatccaggacaatggtattgtcacatcaggtgaagtttcaggtgaaatcaggtttcagaatgtctcatttgcataccccacaaggccagatatttcagttttagacaatgtgtcttttagtgtgacgccaggagaagtgattgcacttgtcggtccaagtggcggcggaaaaagcacttgcataagtcttctagaacacttctatgaaccaacaactggggaagttctgattgattctattccagtaaagaattttgaacacaaatatttgcacagcaaagtagcgctggttggtcaagaacctgttcttttcgccagatcggtcaaggagaacattgcgtatggccttgacagtgatggcgagattgatcaaagtttggtagaagatgtgtcccgacttgccaatgcacactctttcatcagtgacatgccagagggttatgacaccgaaactggagagaagggcttacagttatcaggtggacaaaagcaaagagttgccattgctagagcgctggtgcgaaatccaagaatactcctcctcgatgaagcgactagtgctctagatgccgaaagtgagcatctcgtccaggatgcaatttacaagaatttaactggccatacagttttgataatagcccatcgcttgagtactatagagaaagctgacaagatcgtggttattgaccaaggtaaagtcattgcacaagggaagcacagagaacttgtggaacagaatggactgtatgcaaaacttgttaaacgtcaaatgttagggcttgaaaagaagaattctgtgactgacaatgcacagcattcaggacatggtcacagggatcatgctgattcagaaagtagtgacagtggcagctctaatctttcttctagcccacgcatttcagctttgtcaaaaatgtga

Transcript

evm.model.Ap4.6643

ATGGCGCGTTGCTTTCGTTGCCGCGGTTTGGTAAAACCACTCTTTATCTGCATATCAGGAGCTCTTTTGGACGTCTTACTATCTGGCGTGTTACTTATTCATGGCAAGAACATCTCCTCGTTCAGTGAACATTCACAAGTGGAAGACTTCAAATTTTGCTCGTCTGTTTTTGATTTGTGGATTTTATCGTTGATACGTTCATGTGCATTATTGGGTGCCACTTTTGGACTGTTGTTTGCTAAACGCAAGATGGACGCTGTTTCCAAAATTATTCAATTCAAGAAGCCTTGGCTTTATTATAGCATTGGCGTCGTGGTCTTCGTTGTAGTAAAGTTTCTGCTCAGTAAAGAATGCAGCTTGGACAAAAACTCCAAGATTTGGCAGTGGTGTTATATGGGATGGACTGTGGGAAGTACATTCATGGCAAATGGTCTCTGGTACTTGCTTTCTAAAATTAAAGTACTGGGCATGTCTACAGAACATGAAATTGGCTTAATACAAGAACGAGAGAGTCTCCTTGATGTTGGTGATTTTAATTATTCAGATGGTGCCCCTAGTGACGAAAACCAGACCAAAAAAGAGCACGAAAGTACCATTTCTGCTTGGAGACTTATGTCATATTGTAAACCGGATATTCCTCACATTTCATTGGCATCTTTGTTCCTTTTGCTAGCAGCAAATGGTGAAATCTTCATTCCCTATTATACTGGGCAAGTTATAGACAGCATCGCAATTGAGAAGGACAAGGCTAAATTTATGACTTCCATTCTCATAATGACACTGATTTCGCTGGGTACAGCTATTGCTGCTGGTTTGCGAGGTGGTATGTTTACTTTAATTGCTGCAAGGTTTACCAAAAGAATCAGCAACCTTTTATTTGGCTCAATTGTAAAGCAAGAAATTGGATTTTTCGACAGCACAAAAACTGGTGATATAGTCTCACGTCTGACCTCTGACACAACAAAAATGTCTGATCAAGTTGGATTGAACATTAATGTATTCCTTCGTAATTGCGTCCAATCCATTGGAACATGTGTCTTTATGTTTAAACTCTCATGGAAGTTAACCATTGTTACTTTGATTGGTCTTCCTCTTGTCGCATTTATTTCGGACATTTATGGAGAATACTACAAGAAACTGTCAACACAGGTGCAAGAAGCAACTGCCAAAGCAAACGAAATTGCTGCAGAAGTTGTCTCTTCCATGAAGACTGTTCGCAGCTTTGCAAATGAAGATGGTGAATACAAGCGTTATGAGAACAAACAAGAAGCTATATATAAACTCAGAATCAAGGAATCATTTCTCTACGGAGGCTACAGATGGTGTACAGAAATCCTTGCTCTTGCCCTCGACGTTGTAGTCCTTCTTTATGGTGGTCATTTAGTACTTGAAGGAGAGCTCAGTGGAGGCTACCTAGTTTCCTTTATATTGTACCAGTTGCAACTTAGTTTCTACATTGATGAAGTTGGTGAGATTTACACAGGTCTTATGGAAGCTGTGGGTGCTTCTCAGAAGGTATTTGAGCTTATTGATCGCAAGCCTAAAATCCAGGACAATGGTATTGTCACATCAGGTGAAGTTTCAGGTGAAATCAGGTTTCAGAATGTCTCATTTGCATACCCCACAAGGCCAGATATTTCAGTTTTAGACAATGTGTCTTTTAGTGTGACGCCAGGAGAAGTGATTGCACTTGTCGGTCCAAGTGGCGGCGGAAAAAGCACTTGCATAAGTCTTCTAGAACACTTCTATGAACCAACAACTGGGGAAGTTCTGATTGATTCTATTCCAGTAAAGAATTTTGAACACAAATATTTGCACAGCAAAGTAGCGCTGGTTGGTCAAGAACCTGTTCTTTTCGCCAGATCGGTCAAGGAGAACATTGCGTATGGCCTTGACAGTGATGGCGAGATTGATCAAAGTTTGGTAGAAGATGTGTCCCGACTTGCCAATGCACACTCTTTCATCAGTGACATGCCAGAGGGTTATGACACCGAAACTGGAGAGAAGGGCTTACAGTTATCAGGTGGACAAAAGCAAAGAGTTGCCATTGCTAGAGCGCTGGTGCGAAATCCAAGAATACTCCTCCTCGATGAAGCGACTAGTGCTCTAGATGCCGAAAGTGAGCATCTCGTCCAGGATGCAATTTACAAGAATTTAACTGGCCATACAGTTTTGATAATAGCCCATCGCTTGAGTACTATAGAGAAAGCTGACAAGATCGTGGTTATTGACCAAGGTAAAGTCATTGCACAAGGGAAGCACAGAGAACTTGTGGAACAGAATGGACTGTATGCAAAACTTGTTAAACGTCAAATGTTAGGGCTTGAAAAGAAGAATTCTGTGACTGACAATGCACAGCATTCAGGACATGGTCACAGGGATCATGCTGATTCAGAAAGTAGTGACAGTGGCAGCTCTAATCTTTCTTCTAGCCCACGCATTTCAGCTTTGTCAAAAATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NP78	ABC-type oligopeptide transporter ABCB9 OS=Homo sapiens OX=9606 GN=ABCB9 PE=1 SV=1
Q9JJ59	ABC-type oligopeptide transporter ABCB9 OS=Mus musculus OX=10090 GN=Abcb9 PE=1 SV=1
Q9QYJ4	ABC-type oligopeptide transporter ABCB9 OS=Rattus norvegicus OX=10116 GN=Abcb9 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000672 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00664 all species →	ABC_membrane	ABC transporter transmembrane region	Family	Interproscan
PF00005 all species →	ABC_tran	ABC transporter	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039421 all species →	Family	Type 1 protein exporter	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003439 all species →	Domain	ABC transporter-like, ATP-binding domain	Interproscan
IPR017871 all species →	Conserved_site	ABC transporter-like, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR011527 all species →	Domain	ABC transporter type 1, transmembrane domain	Interproscan
IPR036640 all species →	Homologous_superfamily	ABC transporter type 1, transmembrane domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43394 all species →	ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0015421 all species →	Molecular Function	ABC-type oligopeptide transporter activity	Interproscan
GO:0090374 all species →	Biological Process	oligopeptide export from mitochondrion	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0140359 all species →	Molecular Function	ABC-type transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05656	ABCB9, TAPL; ATP-binding cassette, subfamily B (MDR/TAP), member 9	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.