Genomic Location: Ap4:51320069...51345911
NR annotation: XP_020602820.1, protein fantom-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6675 |
| Transcript |
| evm.model.Ap4.6675 |
| Protein |
| evm.model.Ap4.6675 |
| UniProt accession | Description |
|---|---|
| Q68CZ1 | Protein fantom OS=Homo sapiens OX=9606 GN=RPGRIP1L PE=1 SV=2 |
| Q8CG73 | Protein fantom OS=Mus musculus OX=10090 GN=Rpgrip1l PE=1 SV=2 |
| Q9GLM3 | X-linked retinitis pigmentosa GTPase regulator-interacting protein 1 OS=Bos taurus OX=9913 GN=RPGRIP1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003431 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00168 all species → | C2 | C2 domain | Domain | Interproscan |
| PF18111 all species → | RPGR1_C | Retinitis pigmentosa G-protein regulator interacting C-terminal | Domain | Interproscan |
| PF11618 all species → | C2-C2_1 | First C2 domain of RPGR-interacting protein 1 | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR035892 all species → | Homologous_superfamily | C2 domain superfamily | Interproscan |
| IPR000008 all species → | Domain | C2 domain | Interproscan |
| IPR031139 all species → | Family | RPGRIP1 family | Interproscan |
| IPR041091 all species → | Domain | RPGRIP1, C-terminal | Interproscan |
| IPR021656 all species → | Domain | RPGR-interacting protein 1, first C2 domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14240 all species → | RETINITIS PIGMENTOSA GTPASE REGULATOR-INTERACTING PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035869 all species → | Cellular Component | ciliary transition zone | Interproscan |
| GO:1905515 all species → | Biological Process | non-motile cilium assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16550 | RPGRIP1L; protein fantom | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of evm.model.Ap4.6675 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
