Gene detail

Detailed information of evm.model.Ap4.6785 in Astrangia poculata

Genomic Location: Ap4:52317149...52331182
NR annotation: XP_020622688.1, serine/threonine-protein kinase PRP4 homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6785

atggcggccgaggttgatggtggaagagagaaaaagagagagacgacaaaagaggaaggagacgacgaatcgtcagatagcagtgactcaactcgtgaagtcgacggcccccatattgggaacgaaaaatcgacatctgaccgtaaacacgaacacaagaaaaagaagaaaaagcataaacacaagcacaagagtcacaagcacaaacataaacgccacagaagaaaagataaggaagatacggctgagaatggcgaacctgccgagaaaaagtctaaaatcgcagacgaacttttagaactcgagagaagaaaagcatttcttcaagaacagctggccgagaatgctcagggaaacgagaaaactacatttgaaaacgataggctcccgaagagtaaaaaagatgaagagtttaaagacaggcatagagatcaagagaaacaaagacatgaacataaaagcgacagaaaggtagttgactctagggctgaaactgatagctttgaaaaacacaagcgaaaggaaccaagcccatctagaggtaaagaaagaaaagaggatagcaaagaaaatagtaaaccacgcacagataattcacagaaagacgaaaagtctcgagatcactcatacagtcatcgttctagaaggcatagcagctctcatgacaacagtaaaactgaattaaaatctaggcatgattcaaatttaaaaaccactattgaaaaggataagtctgcgctccaagagagagattcatccaagactgatactaacagaaaggacagcgggaggaaatcaaggtcacctaaacgtcgctcaagatccaaatcgccaaagaaagagggactgtctgagaaggaacacaagtcaaaggaaagatcaagaaggtcaagcagccgatcgccaaggagagatttatcaaaggaaaggaaaaacagacaggaaggtggcagaagaagtagcagatcaccaaggagacagggaaggtcatcttcaaggtcacgaaggcacagtagatctccaaggcggagaagccgatcaccaaggcgccgtagtcgctctccaagaaggaggagtaagtctccaagacggcgtagtaggtcaaggtcaccacgtagaagacgcaatagcgataaatacaagggtagttactctgaaggacaggcacataaaggagactcagatcacgatgttgacttgtaccactttgagatggaagaggaagaagaagaagatgaagatgcaataattgagaaaagaagactccagaggctagccattttgcagaagtaccaaggcaccacatcaaatgtaccctcaacagcaacctcattagtgtcacagtcgccatctggagagcgatcagacagcgaagatagtgacactgtggaaaagctagccactgaggatttggaaaaagaaatagcactggccaacagtcagacagaaaatgaacttaaggatgccatgaatgaaaaggaatctaaagaagatagcgagacaaaatctagtgttggtgacatgtttgctgatgatgatatgttctctgacagctacagtagtcctgcaagagctctgaaagtggaggcaggaaaggaaaacccaaatctaacagataactgggatgatgctgaaggatattacagaattcgcatcagtgaagttcttgacaagcggtactgtgtgtatggctacacaggggcaggagtgtttggcaatgttgtacgtgcaagagatcaagcaaggggtaaccaagaagtggcagtgaaaatcatcaggaacaatgaaatgatgcacaaaactggtctgaaagaacttgaattcctaaagaaacttaattcagctgatccagacgacaagtatcactgcctgcaattgtttcgacatttctttcacaagaatcatttgtgtttagtctttgaatcactcagtatgaacttgagagaagttttgaggaagtatggccagaatgtgggactgcattacaaagcagtgcgatcctacagtcagcagctgttacttgccctgaagctcttgaagaagactggtataatccatgcagacattaaacctgataatatcctggtgaatgaatcaaaacttgtcgtaaagctttgtgattttggatcggcctcatttgcttctgactgtgatataactccatatctagtcagtcgtttttacagagcaccagaaataattataggagcaaagtatgactacagcatagacttatggtctgtggcaactacagtgtttgaactttacactggaaagattatgttttctgggaaaaccaacaatgaaatgcttaaactgatgatggactacaaagggaaaatacccaacaagatgatccgaaaaggattactacgagatcaacactttgatgagaattgcaacttcctctaccatgaggtggacaaaatcactcaaagggagaagataactgtaatgggggcaatcaacccaaacaaagaagtgtttgaatcattacttggctacaaaaagcttaacgaggaacacaaacggaaagtgatgcaactgaaggatcttctcgacaaatgtctcatgttagacccagcaaaaaggatctcactcaatcaggctctcacacatcctttcatcacagaaaaggaacagccttaa

Transcript

evm.model.Ap4.6785

ATGGCGGCCGAGGTTGATGGTGGAAGAGAGAAAAAGAGAGAGACGACAAAAGAGGAAGGAGACGACGAATCGTCAGATAGCAGTGACTCAACTCGTGAAGTCGACGGCCCCCATATTGGGAACGAAAAATCGACATCTGACCGTAAACACGAACACAAGAAAAAGAAGAAAAAGCATAAACACAAGCACAAGAGTCACAAGCACAAACATAAACGCCACAGAAGAAAAGATAAGGAAGATACGGCTGAGAATGGCGAACCTGCCGAGAAAAAGTCTAAAATCGCAGACGAACTTTTAGAACTCGAGAGAAGAAAAGCATTTCTTCAAGAACAGCTGGCCGAGAATGCTCAGGGAAACGAGAAAACTACATTTGAAAACGATAGGCTCCCGAAGAGTAAAAAAGATGAAGAGTTTAAAGACAGGCATAGAGATCAAGAGAAACAAAGACATGAACATAAAAGCGACAGAAAGGTAGTTGACTCTAGGGCTGAAACTGATAGCTTTGAAAAACACAAGCGAAAGGAACCAAGCCCATCTAGAGGTAAAGAAAGAAAAGAGGATAGCAAAGAAAATAGTAAACCACGCACAGATAATTCACAGAAAGACGAAAAGTCTCGAGATCACTCATACAGTCATCGTTCTAGAAGGCATAGCAGCTCTCATGACAACAGTAAAACTGAATTAAAATCTAGGCATGATTCAAATTTAAAAACCACTATTGAAAAGGATAAGTCTGCGCTCCAAGAGAGAGATTCATCCAAGACTGATACTAACAGAAAGGACAGCGGGAGGAAATCAAGGTCACCTAAACGTCGCTCAAGATCCAAATCGCCAAAGAAAGAGGGACTGTCTGAGAAGGAACACAAGTCAAAGGAAAGATCAAGAAGGTCAAGCAGCCGATCGCCAAGGAGAGATTTATCAAAGGAAAGGAAAAACAGACAGGAAGGTGGCAGAAGAAGTAGCAGATCACCAAGGAGACAGGGAAGGTCATCTTCAAGGTCACGAAGGCACAGTAGATCTCCAAGGCGGAGAAGCCGATCACCAAGGCGCCGTAGTCGCTCTCCAAGAAGGAGGAGTAAGTCTCCAAGACGGCGTAGTAGGTCAAGGTCACCACGTAGAAGACGCAATAGCGATAAATACAAGGGTAGTTACTCTGAAGGACAGGCACATAAAGGAGACTCAGATCACGATGTTGACTTGTACCACTTTGAGATGGAAGAGGAAGAAGAAGAAGATGAAGATGCAATAATTGAGAAAAGAAGACTCCAGAGGCTAGCCATTTTGCAGAAGTACCAAGGCACCACATCAAATGTACCCTCAACAGCAACCTCATTAGTGTCACAGTCGCCATCTGGAGAGCGATCAGACAGCGAAGATAGTGACACTGTGGAAAAGCTAGCCACTGAGGATTTGGAAAAAGAAATAGCACTGGCCAACAGTCAGACAGAAAATGAACTTAAGGATGCCATGAATGAAAAGGAATCTAAAGAAGATAGCGAGACAAAATCTAGTGTTGGTGACATGTTTGCTGATGATGATATGTTCTCTGACAGCTACAGTAGTCCTGCAAGAGCTCTGAAAGTGGAGGCAGGAAAGGAAAACCCAAATCTAACAGATAACTGGGATGATGCTGAAGGATATTACAGAATTCGCATCAGTGAAGTTCTTGACAAGCGGTACTGTGTGTATGGCTACACAGGGGCAGGAGTGTTTGGCAATGTTGTACGTGCAAGAGATCAAGCAAGGGGTAACCAAGAAGTGGCAGTGAAAATCATCAGGAACAATGAAATGATGCACAAAACTGGTCTGAAAGAACTTGAATTCCTAAAGAAACTTAATTCAGCTGATCCAGACGACAAGTATCACTGCCTGCAATTGTTTCGACATTTCTTTCACAAGAATCATTTGTGTTTAGTCTTTGAATCACTCAGTATGAACTTGAGAGAAGTTTTGAGGAAGTATGGCCAGAATGTGGGACTGCATTACAAAGCAGTGCGATCCTACAGTCAGCAGCTGTTACTTGCCCTGAAGCTCTTGAAGAAGACTGGTATAATCCATGCAGACATTAAACCTGATAATATCCTGGTGAATGAATCAAAACTTGTCGTAAAGCTTTGTGATTTTGGATCGGCCTCATTTGCTTCTGACTGTGATATAACTCCATATCTAGTCAGTCGTTTTTACAGAGCACCAGAAATAATTATAGGAGCAAAGTATGACTACAGCATAGACTTATGGTCTGTGGCAACTACAGTGTTTGAACTTTACACTGGAAAGATTATGTTTTCTGGGAAAACCAACAATGAAATGCTTAAACTGATGATGGACTACAAAGGGAAAATACCCAACAAGATGATCCGAAAAGGATTACTACGAGATCAACACTTTGATGAGAATTGCAACTTCCTCTACCATGAGGTGGACAAAATCACTCAAAGGGAGAAGATAACTGTAATGGGGGCAATCAACCCAAACAAAGAAGTGTTTGAATCATTACTTGGCTACAAAAAGCTTAACGAGGAACACAAACGGAAAGTGATGCAACTGAAGGATCTTCTCGACAAATGTCTCATGTTAGACCCAGCAAAAAGGATCTCACTCAATCAGGCTCTCACACATCCTTTCATCACAGAAAAGGAACAGCCTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5RKH1	Serine/threonine-protein kinase PRP4 homolog OS=Rattus norvegicus OX=10116 GN=Prp4k PE=1 SV=1
Q13523	Serine/threonine-protein kinase PRP4 homolog OS=Homo sapiens OX=9606 GN=PRP4K PE=1 SV=3
Q61136	Serine/threonine-protein kinase PRP4 homolog OS=Mus musculus OX=10090 GN=Prp4k PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050494 all species →	Family	Serine/threonine and dual-specificity kinase	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR044092 all species →	Domain	Serine/threonine-protein PRP4, catalytic domain	Interproscan
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24058 all species →	DUAL SPECIFICITY PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0018105 all species →	Biological Process	peptidyl-serine phosphorylation	Interproscan
GO:0018107 all species →	Biological Process	peptidyl-threonine phosphorylation	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0045292 all species →	Biological Process	mRNA cis splicing, via spliceosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08827	PRPF4B; serine/threonine-protein kinase PRP4	EC:2.7.11.1	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.