Genomic Location: Ap4:52470231...52485046
NR annotation: XP_020625796.1, poly [ADP-ribose] polymerase 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.6797 |
| Transcript |
| evm.model.Ap4.6797 |
| Protein |
| evm.model.Ap4.6797 |
| UniProt accession | Description |
|---|---|
| O88554 | Poly [ADP-ribose] polymerase 2 OS=Mus musculus OX=10090 GN=Parp2 PE=1 SV=3 |
| Q9UGN5 | Poly [ADP-ribose] polymerase 2 OS=Homo sapiens OX=9606 GN=PARP2 PE=1 SV=2 |
| Q11207 | Poly [ADP-ribose] polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=PARP2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0001433 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00644 all species → | PARP | Poly(ADP-ribose) polymerase catalytic domain | Family | Interproscan |
| PF05406 all species → | WGR | WGR domain | Domain | Interproscan |
| PF02825 all species → | WWE | WWE domain | Family | Interproscan |
| PF02877 all species → | PARP_reg | Poly(ADP-ribose) polymerase, regulatory domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR012317 all species → | Domain | Poly(ADP-ribose) polymerase, catalytic domain | Interproscan |
| IPR008893 all species → | Domain | WGR domain | Interproscan |
| IPR037197 all species → | Homologous_superfamily | WWE domain superfamily | Interproscan |
| IPR036930 all species → | Homologous_superfamily | WGR domain superfamily | Interproscan |
| IPR004170 all species → | Domain | WWE domain | Interproscan |
| IPR050800 all species → | Family | ADP-ribosyltransferase diphtheria toxin-like | Interproscan |
| IPR036616 all species → | Homologous_superfamily | Poly(ADP-ribose) polymerase, regulatory domain superfamily | Interproscan |
| IPR004102 all species → | Domain | Poly(ADP-ribose) polymerase, regulatory domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10459 all species → | DNA LIGASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003950 all species → | Molecular Function | NAD+-protein poly-ADP-ribosyltransferase activity | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006302 all species → | Biological Process | double-strand break repair | Interproscan |
| GO:0070212 all species → | Biological Process | protein poly-ADP-ribosylation | Interproscan |
| GO:1990404 all species → | Molecular Function | NAD+-protein ADP-ribosyltransferase activity | Interproscan |
evm.model.Ap4.6797.Transcript abundance of evm.model.Ap4.6797 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
