Gene detail

Detailed information of evm.model.Ap4.6801 in Astrangia poculata

Genomic Location: Ap4:52506696...52533410
NR annotation: XP_020623202.1, uncharacterized protein LOC110060744 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.6801

atgttacggagggctatgtatgcctctcttgtggagtccaagaagccctcgcctaacaaactgtccctgggccagcatcattcaacaacaagcaatgaaagaactagtgatgacgactcacaagataccatcaatgttaactcggacgtagaagaaataaatatcaagccttgtaaaaatcatgaggggtttgacaacaataacaaggcttgccagtctgaacacatcaaggatgcgcaatgtaccgagtcacatgtcatcccctccatggctaacactgcaacatcaaagaacaaaaaagtttctaaggaaccaagcaaacttcaaaattatgtgatcaagaaaaagaaagagaagaaaaccaaactaaaaggtctatttagaactacatcaccatcaaatactcaaactcaaagtgacacttctggaatcacaggttttcctacaaaaggagcgttgaacagtggaaagggaattaagaagaaaaagaggcaaagaggagcactagcagtttttgtagccatgaataaatctgcaggaggaaaactaaataataaccatggcctggacaaggaactgcttttaaaaaataaaaagaagaggagaaggaagagaaaaaaccttgagagtcaagtaattcgaggtgatggtgcagtgaatatggactgtggcaagcagtctggtgttgaaagcgaggaatcaccagtcaagaaatctagaaaggaggagagaaaaaaaccaagtagaacggtacaggcacagaggaaatttgcaaagaaccatccactgagtccaacaagcatgaggtatcgggaagaaagaaacctgctaacaactgcttgcacatcaagagcaaaaacggaggatttcctgactttcctttgcttgagaaataatcctgtactgcctaaagagcttgaggtcttcaatcacccttgcctgccaatgtcaccgctatcagaggaagaagatgacaattcctccccaccctcccccacccagtctcaatcatcaatgtcaaactcatcaaacctgtcaagcgctgtacagaaatccttcactgactcccctgccccgtctgtggatagtccagcgatgggagagggtccatcttgggagagtggggtcgttagaatgtttgctgatggtcccaagggactcgccggcaaaggcaaagacgagaaaaaatatgatgagcttcttccaagtgatgaggcggatagccccagagagcttaccaagtcagtcacacctccactagccttccgagtctcttcccgtccaacgaacttgtcaccgtaccgaacaaaggacaagcaattaccaagaccaattcctaaacctttcgctgtcaagccacttcttacgggatcttcagccacgaggacttcattttctcctttaacggggaacacagggggtagtacaatcccccctcccccaccgctgttacaatcgtcagaatcgtcatcatgctccccaccccctcccccgttactgtacatccctgctgcagctcaacgagtcactcatctccgtgagcctcccacgctccagagatttccttcgacgtctccaacacgtgatcaggaaagcgatgcacgtgcagagctgccgccgaagttgtcaatcattcaagatgacgggccgccccccttgaagaggtttcctccagtggtcatagagcatgatggcgcgaagaagaccgaaagtaactcgagcaagccgttcttaacgcacgtaagttcttcagagttcaatccacgttcggtgtggtccctaaataaaaatgaatcccaggccggagctacagcggttagcgctgagaaacccagcacttctttgtgcgacttgactaaaatttcagaacaagaaccagagattaacaggactgggtctccatggagcagcaaagaaatgcctcgtttacggagacactcttcagcaagtgagtatacagatgtacgcgctgaagagctgggccatttctccgggatgtcacgtgcggtcaactctagtagcagcccccctcggcttgaacgcgtagctgatccggtagacactggtacccaagctggtcgagttgaatctactggaggtcgcggtgaaacatcccgtaatcacattgattcttccggagctcgctttccgtctcatcctcctattcttgtaagacattcaacgggttacccagacgcgagcgttagtcgaacgtctcttcaaaaagaaacattaacttctggcggctgtgattctaatcggcgacagccttcaccgtttggggacttagcttcgtctgggcatgaaaacgcgcagtcacttcaggaacggaattacgctcgacctatacccgtcgttgacccccttgtctccgcaaggcactctccagtgtttatgtcctacggaaataaatacaagagcacgtacgttttctcaaaccgacagacattctcgcaggcagaaaacgaacctaggcctgtgcaagtgagctctttggtcatgcccagtaaaaatggtgtaagagtagcatcaacaagctctgaggttaattcaatgcgttttcaatcagttaatgatggctttggccgatcggatgaaaggcaacactctcgctccgtgcagagtcagtatgcggggccatcgtcttacattcatcaatcatacaataacctgtcaagtgaactaaatactgatgcaatgacggcaaatggacaatttaacaattcacctgtgggattcaagagaatcccttctccaagatcggacttgttcagcggcatatcgccaaaaccggttaacactgcgtgtatttcgcacgtagatgttcctttttgtggttccttgtcttctggaaatcaaccgcgatcaactattggacaaaaagagcacgcgcttgacagcctaccccccacgtggtctcatctagagtcgccttattccattctttccaccgctccacggaattctccccccaaaccgtacactttttctgtaaatttctctcaatcttcgcgccaatctggaacgtattcagtttcaaattctagttcaaagtcaggaatattagacggatattccttgcgtccgatgggagcaagcgatggccagcacgctcctgttattcagcgtgcaagtatcagcaaaggcgagccattgagcagcatacagcacgaactttgtgtaggcgaacaagaaaatttcagaacgtataatttgcctaaggcttttcaaggaggcgatatgcggcctgagtcaagctcaagcgcatttttgaacgacgttgcatcatggagagaccacttacatgtaatgcaaccttatctaaacgatcacaacacaggaagtttaaacagggaaacctcaagcccgttggctcatcacacatttccagcaaggacgccatctttagacttgactaatttaaaagaaagaaaagacaaagttttggattcaactgttacgggcagtactgcttttaagtctaacagttctccgaaagttgtcaagaagactttaggttccaagcgaaaggatacgtgcccttctctggaaaagacaaatgattcaccagtatttcaccccagtgaggaggaattccaggaccctgttgcctacatcaagaagatacgatgcgatgctgagaagtttggtgtatgcgtcattgttcctcccgaatcatggaagcctgagtttcaggtccctgacaatgtgcggtttaatagcgagtgtcagctgatccacaggcttcaagacaggtggggtcctgtagaggaagaattggcatgcatcaggaaacatctcgatcagcagtctatctctcttgtgcctatgccccagatcggcggatatgaaatcgatctaccccagttttctagagtagtgaaacaatttggtggactgcagaaggtaattgacagcaaaaagtggacaaaaatcgccgacatattgaaaataccgcgggcggctcaagaccgtatcggaaaacttcaggacatctactgcaaatatttactctcgtacgatctcctaccgaaggaggaaaaagctaaactgctgcaagaggttcagacggagagagaaaacaatacttcctctgaacaagattcagtttcctggtctgtcaagggccgcagtttttccttggtgccgtttcaaagacttgcaaggaacgtacagggacatttcttcaagaatccaccttcagctaatgatgtagagcgggaattctggaggtttgtccataaccgtgaaacctatgtgtcagtacaccgtggaactgtggacacgaaccaggagaacagctgcttcccaactgacaaaggaaatccttattcaaagcttggttggaacttgaatgttctgccgcacttgcctggttcagttttgaagcacctgggatttgttcaagacgtaacagtcccctggattcagttcgacatggttttctctgtgaagacatggcagacgcatcctctcgctctatacaccgtggagtaccttcacagcggtgccgacaaaatctggtacagtgtttctgctggggaaaagaaaacattcgaatctcttttcggtcaagatgacagtgcagcttctgaagcatcacgagttgataagatggtttctcccagcagtttgaatgacagcggactaacagttacaagagtggtacagaaacagggacagttcgtgatcgtctttcctgaagcgtactacagtagcgtcagttgcggctactccatttctgaagccgtggcctttgctcctcctgactgggtgatgattgggtctaaactgtacaaggacttacagggcacttcttggtggagcgaattcacatatgacagactgctgcttggcttggctaaagagttgaatgatgaaagccgggaagttcttgagtgtttactgtcggagctaaaagctatcagggacgaagagaaagcgttaatggttcagcttcttgaacttggtttggttgaaaccctagtcgacagcggaatgaagtcgtcagggtcacccggaggtaagaaaggcaagaaatcgatcacgaactggcctcaagctgactcaagctgtgttttatactgtgaagactgtgatcgcccatgttatctgtctgcggtaacaagtgaagatgagcctcaggttttgtgtttaaaacacgccgtggaacatattcgcgagaaggcctcaccagaaggctttagaattttaagcagacatgatacttgccgactggatgaacttgtgtacaaggtcgaagaaaagcttcaaaatcttcaagctacaccgagttaa

Transcript

evm.model.Ap4.6801

ATGTTACGGAGGGCTATGTATGCCTCTCTTGTGGAGTCCAAGAAGCCCTCGCCTAACAAACTGTCCCTGGGCCAGCATCATTCAACAACAAGCAATGAAAGAACTAGTGATGACGACTCACAAGATACCATCAATGTTAACTCGGACGTAGAAGAAATAAATATCAAGCCTTGTAAAAATCATGAGGGGTTTGACAACAATAACAAGGCTTGCCAGTCTGAACACATCAAGGATGCGCAATGTACCGAGTCACATGTCATCCCCTCCATGGCTAACACTGCAACATCAAAGAACAAAAAAGTTTCTAAGGAACCAAGCAAACTTCAAAATTATGTGATCAAGAAAAAGAAAGAGAAGAAAACCAAACTAAAAGGTCTATTTAGAACTACATCACCATCAAATACTCAAACTCAAAGTGACACTTCTGGAATCACAGGTTTTCCTACAAAAGGAGCGTTGAACAGTGGAAAGGGAATTAAGAAGAAAAAGAGGCAAAGAGGAGCACTAGCAGTTTTTGTAGCCATGAATAAATCTGCAGGAGGAAAACTAAATAATAACCATGGCCTGGACAAGGAACTGCTTTTAAAAAATAAAAAGAAGAGGAGAAGGAAGAGAAAAAACCTTGAGAGTCAAGTAATTCGAGGTGATGGTGCAGTGAATATGGACTGTGGCAAGCAGTCTGGTGTTGAAAGCGAGGAATCACCAGTCAAGAAATCTAGAAAGGAGGAGAGAAAAAAACCAAGTAGAACGGTACAGGCACAGAGGAAATTTGCAAAGAACCATCCACTGAGTCCAACAAGCATGAGGTATCGGGAAGAAAGAAACCTGCTAACAACTGCTTGCACATCAAGAGCAAAAACGGAGGATTTCCTGACTTTCCTTTGCTTGAGAAATAATCCTGTACTGCCTAAAGAGCTTGAGGTCTTCAATCACCCTTGCCTGCCAATGTCACCGCTATCAGAGGAAGAAGATGACAATTCCTCCCCACCCTCCCCCACCCAGTCTCAATCATCAATGTCAAACTCATCAAACCTGTCAAGCGCTGTACAGAAATCCTTCACTGACTCCCCTGCCCCGTCTGTGGATAGTCCAGCGATGGGAGAGGGTCCATCTTGGGAGAGTGGGGTCGTTAGAATGTTTGCTGATGGTCCCAAGGGACTCGCCGGCAAAGGCAAAGACGAGAAAAAATATGATGAGCTTCTTCCAAGTGATGAGGCGGATAGCCCCAGAGAGCTTACCAAGTCAGTCACACCTCCACTAGCCTTCCGAGTCTCTTCCCGTCCAACGAACTTGTCACCGTACCGAACAAAGGACAAGCAATTACCAAGACCAATTCCTAAACCTTTCGCTGTCAAGCCACTTCTTACGGGATCTTCAGCCACGAGGACTTCATTTTCTCCTTTAACGGGGAACACAGGGGGTAGTACAATCCCCCCTCCCCCACCGCTGTTACAATCGTCAGAATCGTCATCATGCTCCCCACCCCCTCCCCCGTTACTGTACATCCCTGCTGCAGCTCAACGAGTCACTCATCTCCGTGAGCCTCCCACGCTCCAGAGATTTCCTTCGACGTCTCCAACACGTGATCAGGAAAGCGATGCACGTGCAGAGCTGCCGCCGAAGTTGTCAATCATTCAAGATGACGGGCCGCCCCCCTTGAAGAGGTTTCCTCCAGTGGTCATAGAGCATGATGGCGCGAAGAAGACCGAAAGTAACTCGAGCAAGCCGTTCTTAACGCACGTAAGTTCTTCAGAGTTCAATCCACGTTCGGTGTGGTCCCTAAATAAAAATGAATCCCAGGCCGGAGCTACAGCGGTTAGCGCTGAGAAACCCAGCACTTCTTTGTGCGACTTGACTAAAATTTCAGAACAAGAACCAGAGATTAACAGGACTGGGTCTCCATGGAGCAGCAAAGAAATGCCTCGTTTACGGAGACACTCTTCAGCAAGTGAGTATACAGATGTACGCGCTGAAGAGCTGGGCCATTTCTCCGGGATGTCACGTGCGGTCAACTCTAGTAGCAGCCCCCCTCGGCTTGAACGCGTAGCTGATCCGGTAGACACTGGTACCCAAGCTGGTCGAGTTGAATCTACTGGAGGTCGCGGTGAAACATCCCGTAATCACATTGATTCTTCCGGAGCTCGCTTTCCGTCTCATCCTCCTATTCTTGTAAGACATTCAACGGGTTACCCAGACGCGAGCGTTAGTCGAACGTCTCTTCAAAAAGAAACATTAACTTCTGGCGGCTGTGATTCTAATCGGCGACAGCCTTCACCGTTTGGGGACTTAGCTTCGTCTGGGCATGAAAACGCGCAGTCACTTCAGGAACGGAATTACGCTCGACCTATACCCGTCGTTGACCCCCTTGTCTCCGCAAGGCACTCTCCAGTGTTTATGTCCTACGGAAATAAATACAAGAGCACGTACGTTTTCTCAAACCGACAGACATTCTCGCAGGCAGAAAACGAACCTAGGCCTGTGCAAGTGAGCTCTTTGGTCATGCCCAGTAAAAATGGTGTAAGAGTAGCATCAACAAGCTCTGAGGTTAATTCAATGCGTTTTCAATCAGTTAATGATGGCTTTGGCCGATCGGATGAAAGGCAACACTCTCGCTCCGTGCAGAGTCAGTATGCGGGGCCATCGTCTTACATTCATCAATCATACAATAACCTGTCAAGTGAACTAAATACTGATGCAATGACGGCAAATGGACAATTTAACAATTCACCTGTGGGATTCAAGAGAATCCCTTCTCCAAGATCGGACTTGTTCAGCGGCATATCGCCAAAACCGGTTAACACTGCGTGTATTTCGCACGTAGATGTTCCTTTTTGTGGTTCCTTGTCTTCTGGAAATCAACCGCGATCAACTATTGGACAAAAAGAGCACGCGCTTGACAGCCTACCCCCCACGTGGTCTCATCTAGAGTCGCCTTATTCCATTCTTTCCACCGCTCCACGGAATTCTCCCCCCAAACCGTACACTTTTTCTGTAAATTTCTCTCAATCTTCGCGCCAATCTGGAACGTATTCAGTTTCAAATTCTAGTTCAAAGTCAGGAATATTAGACGGATATTCCTTGCGTCCGATGGGAGCAAGCGATGGCCAGCACGCTCCTGTTATTCAGCGTGCAAGTATCAGCAAAGGCGAGCCATTGAGCAGCATACAGCACGAACTTTGTGTAGGCGAACAAGAAAATTTCAGAACGTATAATTTGCCTAAGGCTTTTCAAGGAGGCGATATGCGGCCTGAGTCAAGCTCAAGCGCATTTTTGAACGACGTTGCATCATGGAGAGACCACTTACATGTAATGCAACCTTATCTAAACGATCACAACACAGGAAGTTTAAACAGGGAAACCTCAAGCCCGTTGGCTCATCACACATTTCCAGCAAGGACGCCATCTTTAGACTTGACTAATTTAAAAGAAAGAAAAGACAAAGTTTTGGATTCAACTGTTACGGGCAGTACTGCTTTTAAGTCTAACAGTTCTCCGAAAGTTGTCAAGAAGACTTTAGGTTCCAAGCGAAAGGATACGTGCCCTTCTCTGGAAAAGACAAATGATTCACCAGTATTTCACCCCAGTGAGGAGGAATTCCAGGACCCTGTTGCCTACATCAAGAAGATACGATGCGATGCTGAGAAGTTTGGTGTATGCGTCATTGTTCCTCCCGAATCATGGAAGCCTGAGTTTCAGGTCCCTGACAATGTGCGGTTTAATAGCGAGTGTCAGCTGATCCACAGGCTTCAAGACAGGTGGGGTCCTGTAGAGGAAGAATTGGCATGCATCAGGAAACATCTCGATCAGCAGTCTATCTCTCTTGTGCCTATGCCCCAGATCGGCGGATATGAAATCGATCTACCCCAGTTTTCTAGAGTAGTGAAACAATTTGGTGGACTGCAGAAGGTAATTGACAGCAAAAAGTGGACAAAAATCGCCGACATATTGAAAATACCGCGGGCGGCTCAAGACCGTATCGGAAAACTTCAGGACATCTACTGCAAATATTTACTCTCGTACGATCTCCTACCGAAGGAGGAAAAAGCTAAACTGCTGCAAGAGGTTCAGACGGAGAGAGAAAACAATACTTCCTCTGAACAAGATTCAGTTTCCTGGTCTGTCAAGGGCCGCAGTTTTTCCTTGGTGCCGTTTCAAAGACTTGCAAGGAACGTACAGGGACATTTCTTCAAGAATCCACCTTCAGCTAATGATGTAGAGCGGGAATTCTGGAGGTTTGTCCATAACCGTGAAACCTATGTGTCAGTACACCGTGGAACTGTGGACACGAACCAGGAGAACAGCTGCTTCCCAACTGACAAAGGAAATCCTTATTCAAAGCTTGGTTGGAACTTGAATGTTCTGCCGCACTTGCCTGGTTCAGTTTTGAAGCACCTGGGATTTGTTCAAGACGTAACAGTCCCCTGGATTCAGTTCGACATGGTTTTCTCTGTGAAGACATGGCAGACGCATCCTCTCGCTCTATACACCGTGGAGTACCTTCACAGCGGTGCCGACAAAATCTGGTACAGTGTTTCTGCTGGGGAAAAGAAAACATTCGAATCTCTTTTCGGTCAAGATGACAGTGCAGCTTCTGAAGCATCACGAGTTGATAAGATGGTTTCTCCCAGCAGTTTGAATGACAGCGGACTAACAGTTACAAGAGTGGTACAGAAACAGGGACAGTTCGTGATCGTCTTTCCTGAAGCGTACTACAGTAGCGTCAGTTGCGGCTACTCCATTTCTGAAGCCGTGGCCTTTGCTCCTCCTGACTGGGTGATGATTGGGTCTAAACTGTACAAGGACTTACAGGGCACTTCTTGGTGGAGCGAATTCACATATGACAGACTGCTGCTTGGCTTGGCTAAAGAGTTGAATGATGAAAGCCGGGAAGTTCTTGAGTGTTTACTGTCGGAGCTAAAAGCTATCAGGGACGAAGAGAAAGCGTTAATGGTTCAGCTTCTTGAACTTGGTTTGGTTGAAACCCTAGTCGACAGCGGAATGAAGTCGTCAGGGTCACCCGGAGGTAAGAAAGGCAAGAAATCGATCACGAACTGGCCTCAAGCTGACTCAAGCTGTGTTTTATACTGTGAAGACTGTGATCGCCCATGTTATCTGTCTGCGGTAACAAGTGAAGATGAGCCTCAGGTTTTGTGTTTAAAACACGCCGTGGAACATATTCGCGAGAAGGCCTCACCAGAAGGCTTTAGAATTTTAAGCAGACATGATACTTGCCGACTGGATGAACTTGTGTACAAGGTCGAAGAAAAGCTTCAAAATCTTCAAGCTACACCGAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F363	Protein Jumonji OS=Gallus gallus OX=9031 GN=JARID2 PE=2 SV=1
Q92833	Protein Jumonji OS=Homo sapiens OX=9606 GN=JARID2 PE=1 SV=2
Q1LVC2	Protein Jumonji OS=Danio rerio OX=7955 GN=jarid2b PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003837 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388 all species →	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan
PF02375 all species →	JmjN	jmjN domain	Family	Interproscan
PF02373 all species →	JmjC	JmjC domain, hydroxylase	Domain	Interproscan
PF02928 all species →	zf-C5HC2	C5HC2 zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003349 all species →	Domain	JmjN domain	Interproscan
IPR003347 all species →	Domain	JmjC domain	Interproscan
IPR036431 all species →	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606 all species →	Domain	ARID DNA-binding domain	Interproscan
IPR004198 all species →	Domain	Zinc finger, C5HC2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10694 all species →	LYSINE-SPECIFIC DEMETHYLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000785 all species →	Cellular Component	chromatin	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006338 all species →	Biological Process	chromatin remodeling	Interproscan
GO:0010468 all species →	Biological Process	regulation of gene expression	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.6801.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.