Detailed information of evm.model.Ap4.6833_evm.model.Ap4.6834 in Astrangia poculata

Genomic Location: Ap4:52909515...52922672
NR annotation: XP_020625377.1, geranylgeranyl transferase type-2 subunit alpha-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5A779Geranylgeranyl transferase type-2 subunit alpha OS=Sus scrofa OX=9823 GN=RABGGTA PE=2 SV=1
Q5EA80Geranylgeranyl transferase type-2 subunit alpha OS=Bos taurus OX=9913 GN=RABGGTA PE=2 SV=1
Q92696Geranylgeranyl transferase type-2 subunit alpha OS=Homo sapiens OX=9606 GN=RABGGTA PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003824 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF07711
all species →		RabGGT_insertRab geranylgeranyl transferase alpha-subunit, insert domain DomainInterproscan
PF01239
all species →		PPTAProtein prenyltransferase alpha subunit repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR002088
all species →		RepeatProtein prenyltransferase, alpha subunitInterproscan
IPR032675
all species →		Homologous_superfamilyLeucine-rich repeat domain superfamilyInterproscan
IPR036254
all species →		Homologous_superfamilyRab geranylgeranyltransferase, alpha subunit, insert-domain superfamilyInterproscan
IPR001611
all species →		RepeatLeucine-rich repeatInterproscan
IPR009087
all species →		DomainRab geranylgeranyltransferase, alpha subunit, insert-domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR11129
all species →		PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008318
all species →		Molecular Functionprotein prenyltransferase activityInterproscan
GO:0018342
all species →		Biological Processprotein prenylationInterproscan
GO:0004663
all species →		Molecular FunctionRab geranylgeranyltransferase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0005968
all species →		Cellular ComponentRab-protein geranylgeranyltransferase complexInterproscan
GO:0018344
all species →		Biological Processprotein geranylgeranylationInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K14050RABGGTA; geranylgeranyl transferase type-2 subunit alphaEC:2.5.1.60
Membrane traffickingko04131deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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