Detailed information of evm.model.Ap4.6873 in Astrangia poculata

Genomic Location: Ap4:53305834...53348594
NR annotation: RMX40561.1, hypothetical protein pdam_00022778 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q69YN4Protein virilizer homolog OS=Homo sapiens OX=9606 GN=VIRMA PE=1 SV=2
A2AIV2Protein virilizer homolog OS=Mus musculus OX=10090 GN=Virma PE=1 SV=1
Q9W1R5Protein virilizer OS=Drosophila melanogaster OX=7227 GN=vir PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002872 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF15912
all species →
VIR_NVirilizer, N-terminalFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR031801
all species →
DomainVirilizer, N-terminalInterproscan
IPR026736
all species →
FamilyProtein virilizerInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23185
all species →
UNCHARACTERIZEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →
Molecular FunctionRNA bindingInterproscan
GO:0036396
all species →
Cellular ComponentRNA N6-methyladenosine methyltransferase complexInterproscan
GO:0080009
all species →
Biological Processobsolete mRNA methylationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K22910VIRMA; protein virilizer-Messenger RNA biogenesisko03019deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap4.6873 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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