Detailed information of evm.model.Ap4.6927 in Astrangia poculata

Genomic Location: Ap4:53877452...53906619
NR annotation: XP_022803918.1, CCR4-NOT transcription complex subunit 1-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A5YKK6CCR4-NOT transcription complex subunit 1 OS=Homo sapiens OX=9606 GN=CNOT1 PE=1 SV=2
A1A5H6CCR4-NOT transcription complex subunit 1 OS=Danio rerio OX=7955 GN=cnot1 PE=2 SV=1
Q6ZQ08CCR4-NOT transcription complex subunit 1 OS=Mus musculus OX=10090 GN=Cnot1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002577 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12842
all species →		DUF3819CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819DomainInterproscan
PF16415
all species →		CNOT1_CAF1_bindCCR4-NOT transcription complex subunit 1 CAF1-binding domainRepeatInterproscan
PF16418
all species →		CNOT1_HEATCCR4-NOT transcription complex subunit 1 HEAT repeatDomainInterproscan
PF16417
all species →		CNOT1_TTP_bindCCR4-NOT transcription complex subunit 1 TTP binding domainRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038535
all species →		Homologous_superfamilyCCR4-NOT subunit 1, TTP binding domain superfamilyInterproscan
IPR040398
all species →		FamilyCCR4-NOT transcription complex subunit 1Interproscan
IPR024557
all species →		DomainCCR4-NOT transcription complex subunit 1, domain 4Interproscan
IPR032191
all species →		DomainCCR4-NOT transcription complex subunit 1, CAF1-binding domainInterproscan
IPR032194
all species →		DomainCCR4-NOT transcription complex subunit 1, HEAT repeatInterproscan
IPR032193
all species →		DomainCCR4-NOT transcription complex subunit 1, TTP binding domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13162
all species →		CCR4-NOT TRANSCRIPTION COMPLEXInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000288
all species →		Biological Processnuclear-transcribed mRNA catabolic process, deadenylation-dependent decayInterproscan
GO:0000932
all species →		Cellular ComponentP-bodyInterproscan
GO:0017148
all species →		Biological Processnegative regulation of translationInterproscan
GO:0030015
all species →		Cellular ComponentCCR4-NOT core complexInterproscan
GO:0060090
all species →		Molecular Functionmolecular adaptor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.6927.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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