Detailed information of evm.model.Ap4.7015 in Astrangia poculata

Genomic Location: Ap4:54953622...54955172
NR annotation: KAJ7383156.1, Activating signal cointegrator 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q15650Activating signal cointegrator 1 OS=Homo sapiens OX=9606 GN=TRIP4 PE=1 SV=4
Q9QXN3Activating signal cointegrator 1 OS=Mus musculus OX=10090 GN=Trip4 PE=1 SV=2
O13855RQC trigger complex subunit RQT4 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC1A6.01c PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007434 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04266
all species →		ASCHASCH domainDomainInterproscan
PF06221
all species →		zf-C2HC5Putative zinc finger motif, C2HC5-typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007374
all species →		DomainASCH domainInterproscan
IPR009349
all species →		DomainTRIP4/RQT4, C2HC5-type zinc fingerInterproscan
IPR039128
all species →		FamilyActivating signal cointegrator 1-likeInterproscan
IPR015947
all species →		Homologous_superfamilyPUA-like superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12963
all species →		THYROID RECEPTOR INTERACTING PROTEIN RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0072344
all species →		Biological Processrescue of stalled ribosomeInterproscan
GO:0180022
all species →		Cellular ComponentRQC-trigger complexInterproscan
GO:0003713
all species →		Molecular Functiontranscription coactivator activityInterproscan
GO:0045893
all species →		Biological Processpositive regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23398TRIP4; activating signal cointegrator 1-Chromosome and associated proteinsko03036deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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