Gene detail

Detailed information of evm.model.Ap4.7039 in Astrangia poculata

Genomic Location: Ap4:55255194...55263193
NR annotation: XP_020623986.1, centromere protein T-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1NPG5	Centromere protein T OS=Gallus gallus OX=9031 GN=CENPT PE=1 SV=2
Q561R1	Centromere protein T OS=Rattus norvegicus OX=10116 GN=Cenpt PE=1 SV=1
Q4R5U8	Centromere protein T OS=Macaca fascicularis OX=9541 GN=CENPT PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010044 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15511 all species →	CENP-T_C	Centromere kinetochore component CENP-T histone fold	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035425 all species →	Domain	CENP-T/Histone H4, histone fold	Interproscan
IPR009072 all species →	Homologous_superfamily	Histone-fold	Interproscan
IPR028255 all species →	Family	Centromere protein T	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46904 all species →	CENTROMERE PROTEIN T	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0046982 all species →	Molecular Function	protein heterodimerization activity	Interproscan
GO:0000278 all species →	Biological Process	mitotic cell cycle	Interproscan
GO:0000776 all species →	Cellular Component	kinetochore	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0051382 all species →	Biological Process	kinetochore assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11512	CENPT; centromere protein T	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.