Gene detail

Detailed information of evm.model.Ap4.7076 in Astrangia poculata

Genomic Location: Ap4:55663379...55664436
NR annotation: XP_020623991.1, doublesex- and mab-3-related transcription factor 3-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011092 (this species only)
Transcription factor family	DM · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00751 all species →	DM	DM DNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036407 all species →	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR001275 all species →	Domain	DM DNA-binding domain	Interproscan
IPR026607 all species →	Family	DMRT family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322 all species →	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565 all species →	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548 all species →	Biological Process	sex differentiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19488	DMRT1; doublesex- and mab-3-related transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.