Gene detail

Detailed information of evm.model.Ap4.7077 in Astrangia poculata

Genomic Location: Ap4:55667204...55705377
NR annotation: XP_020624025.1, vacuolar protein sorting-associated protein 4A-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7077

atgggacagccttttttgtgccgtaagacaagcagagtccctgagaaatgcaagtactcacggatagcattcgtgaaaagcagctctttatggaaatattttactcttgattatcccatgcacgttattaactccaccatcaacaactttgtccgtaatgtctccgcggatacatcgcaagaatctgaaacccatcgtgtcatccgtgttagcctcccgtttaaagatcagacatctgccaatgcagttagacggcatttatgcgatctaagtcacaagatcaacgtcaccgtgcaaccagttttcgtcagcaaaaaactggaacaagaccttaaacctaaagaactcaagccagcgattgttaatcatcattgcgttgtttattctttttcatgtaatctgtgtgatgcggattatgtcgggtacacagcccgacacctacacaaacgcattgctgagcacaaatcatcggcgattggaaagcatttcaaagaatctcatggcgatgtgaacctcctaaaggaaaaccaatttcgtgtcctgaaaaaatgccgaggaaaatttgactgtctcatttacgagatgctatttataaagaaactgcgaccaaatttgaatacgcaggcggactctataccagaggatcttgtacctttgcttcgttttctgggctgttttgctccgcttgtggttatgtctggggacactttaaagaaagctatagacatcgtcaccaaagctacggacgaagataaggctggaaattacgaggaggcgctaagactttacgaacatggagtggagtactttctacacgccataaaatatgaagcccatggagataaatccaaggagagtattagacagaaatgtgtccagtaccttgaaagagctgaaaagctaaagcagtacgttagaggcaaaaacaaaaagaagcctgttgcatcttctggaggaggaaaggagagcagtaaaggtggtaaggatggtaaagaggacagcagtggtgacgaggatgatgatgcagaaacaaaaaaactcagaggacagttaaacagtgccattgtaatggagaaacccaatgttcagtggtcagatgttgctgggttagactcagccaaggaagctttaaaggaggctgtcattctaccaattaaattcccacacttattcacaggggaccgaaaaccttggagtggaattttactttatgggcctcctggtacaggaaaatcatatctagcaaaggctgtggcgaccgaggcaaacaactccacatttatatctgtgtcctcatctgatctggtgtccaagtggcttggagaaagtgaaaggcttgtaaagcaactgtttgagttagctcgtgacaataaaccagccattatcttcattgatgaagtggattctttgtgtggatctagaagtgaaaatgaaagtgaatcagccagaagaattaaaacagagtttctagtgcaaatgcaaggtgttggtgtcgataataaagatgtacttgtgttaggagccactaacattccatggactcttgattctgctattagaagaagatttgaaaagaggatctacattcccttgccggaagcatctgcaagggtgaaaatgtttgaacttcacatgggcaatatcaagcactgtatcacatcaacacagttcagagaacttgcagagaaaacagatgggtattctggagcagatgtcagtatcgtggtacgtgacgccatgatgcaaccggttagaaaagtacaacaagcaacacattttaaaatggtgagaggcgcctctccacaagatcctgaagtcatacaagatgatctattaactccgtgttcaccaggagaacccggagcgttagaaatgacgtggatgcaggtgccaggggaaaagctgcttgaacctattgttaatctgtcggacatgtttcgatcattggcgacatctaaacccacagtgaactctgcagacctgaaaaagtttgaagactttaccagagattttggacaggaaggataa

Transcript

evm.model.Ap4.7077

ATGGGACAGCCTTTTTTGTGCCGTAAGACAAGCAGAGTCCCTGAGAAATGCAAGTACTCACGGATAGCATTCGTGAAAAGCAGCTCTTTATGGAAATATTTTACTCTTGATTATCCCATGCACGTTATTAACTCCACCATCAACAACTTTGTCCGTAATGTCTCCGCGGATACATCGCAAGAATCTGAAACCCATCGTGTCATCCGTGTTAGCCTCCCGTTTAAAGATCAGACATCTGCCAATGCAGTTAGACGGCATTTATGCGATCTAAGTCACAAGATCAACGTCACCGTGCAACCAGTTTTCGTCAGCAAAAAACTGGAACAAGACCTTAAACCTAAAGAACTCAAGCCAGCGATTGTTAATCATCATTGCGTTGTTTATTCTTTTTCATGTAATCTGTGTGATGCGGATTATGTCGGGTACACAGCCCGACACCTACACAAACGCATTGCTGAGCACAAATCATCGGCGATTGGAAAGCATTTCAAAGAATCTCATGGCGATGTGAACCTCCTAAAGGAAAACCAATTTCGTGTCCTGAAAAAATGCCGAGGAAAATTTGACTGTCTCATTTACGAGATGCTATTTATAAAGAAACTGCGACCAAATTTGAATACGCAGGCGGACTCTATACCAGAGGATCTTGTACCTTTGCTTCGTTTTCTGGGCTGTTTTGCTCCGCTTGTGGTTATGTCTGGGGACACTTTAAAGAAAGCTATAGACATCGTCACCAAAGCTACGGACGAAGATAAGGCTGGAAATTACGAGGAGGCGCTAAGACTTTACGAACATGGAGTGGAGTACTTTCTACACGCCATAAAATATGAAGCCCATGGAGATAAATCCAAGGAGAGTATTAGACAGAAATGTGTCCAGTACCTTGAAAGAGCTGAAAAGCTAAAGCAGTACGTTAGAGGCAAAAACAAAAAGAAGCCTGTTGCATCTTCTGGAGGAGGAAAGGAGAGCAGTAAAGGTGGTAAGGATGGTAAAGAGGACAGCAGTGGTGACGAGGATGATGATGCAGAAACAAAAAAACTCAGAGGACAGTTAAACAGTGCCATTGTAATGGAGAAACCCAATGTTCAGTGGTCAGATGTTGCTGGGTTAGACTCAGCCAAGGAAGCTTTAAAGGAGGCTGTCATTCTACCAATTAAATTCCCACACTTATTCACAGGGGACCGAAAACCTTGGAGTGGAATTTTACTTTATGGGCCTCCTGGTACAGGAAAATCATATCTAGCAAAGGCTGTGGCGACCGAGGCAAACAACTCCACATTTATATCTGTGTCCTCATCTGATCTGGTGTCCAAGTGGCTTGGAGAAAGTGAAAGGCTTGTAAAGCAACTGTTTGAGTTAGCTCGTGACAATAAACCAGCCATTATCTTCATTGATGAAGTGGATTCTTTGTGTGGATCTAGAAGTGAAAATGAAAGTGAATCAGCCAGAAGAATTAAAACAGAGTTTCTAGTGCAAATGCAAGGTGTTGGTGTCGATAATAAAGATGTACTTGTGTTAGGAGCCACTAACATTCCATGGACTCTTGATTCTGCTATTAGAAGAAGATTTGAAAAGAGGATCTACATTCCCTTGCCGGAAGCATCTGCAAGGGTGAAAATGTTTGAACTTCACATGGGCAATATCAAGCACTGTATCACATCAACACAGTTCAGAGAACTTGCAGAGAAAACAGATGGGTATTCTGGAGCAGATGTCAGTATCGTGGTACGTGACGCCATGATGCAACCGGTTAGAAAAGTACAACAAGCAACACATTTTAAAATGGTGAGAGGCGCCTCTCCACAAGATCCTGAAGTCATACAAGATGATCTATTAACTCCGTGTTCACCAGGAGAACCCGGAGCGTTAGAAATGACGTGGATGCAGGTGCCAGGGGAAAAGCTGCTTGAACCTATTGTTAATCTGTCGGACATGTTTCGATCATTGGCGACATCTAAACCCACAGTGAACTCTGCAGACCTGAAAAAGTTTGAAGACTTTACCAGAGATTTTGGACAGGAAGGATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O75351	Vacuolar protein sorting-associated protein 4B OS=Homo sapiens OX=9606 GN=VPS4B PE=1 SV=2
Q0VD48	Vacuolar protein sorting-associated protein 4B OS=Bos taurus OX=9913 GN=VPS4B PE=2 SV=1
P46467	Vacuolar protein sorting-associated protein 4B OS=Mus musculus OX=10090 GN=Vps4b PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001842 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17862 all species →	AAA_lid_3	AAA+ lid domain	Domain	Interproscan
PF04212 all species →	MIT	MIT (microtubule interacting and transport) domain	Domain	Interproscan
PF01541 all species →	GIY-YIG	GIY-YIG catalytic domain	Domain	Interproscan
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan
PF09336 all species →	Vps4_C	Vps4 C terminal oligomerisation domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR007330 all species →	Domain	MIT domain	Interproscan
IPR045253 all species →	Domain	Vacuolar protein sorting-associated protein 4, MIT domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR050304 all species →	Family	Microtubule-severing AAA ATPase	Interproscan
IPR041569 all species →	Domain	AAA ATPase, AAA+ lid domain	Interproscan
IPR000305 all species →	Domain	GIY-YIG endonuclease	Interproscan
IPR035901 all species →	Homologous_superfamily	GIY-YIG endonuclease superfamily	Interproscan
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR015415 all species →	Domain	Spastin/Vps4, C-terminal	Interproscan
IPR003960 all species →	Conserved_site	ATPase, AAA-type, conserved site	Interproscan
IPR003593 all species →	Domain	AAA+ ATPase domain	Interproscan
IPR036181 all species →	Homologous_superfamily	MIT domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23074 all species →	AAA DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007033 all species →	Biological Process	vacuole organization	Interproscan
GO:0016197 all species →	Biological Process	endosomal transport	Interproscan
GO:0140603 all species →	Molecular Function	obsolete ATP hydrolysis activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12196	VPS4; vacuolar protein-sorting-associated protein 4	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.