Gene detail

Detailed information of evm.model.Ap4.7096 in Astrangia poculata

Genomic Location: Ap4:55894363...55899983
NR annotation: XP_020617365.1, heterochromatin protein 1-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D5D8	Chromodomain Y-like protein 2 OS=Mus musculus OX=10090 GN=Cdyl2 PE=1 SV=1
Q8N8U2	Chromodomain Y-like protein 2 OS=Homo sapiens OX=9606 GN=CDYL2 PE=1 SV=2
Q339W7	Probable chromo domain-containing protein LHP1 OS=Oryza sativa subsp. japonica OX=39947 GN=LHP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR051219 all species →	Family	Heterochromatin-associated chromo domain-containing protein	Interproscan
IPR017984 all species →	Domain	Chromo domain subgroup	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22812 all species →	CHROMOBOX PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0003682 all species →	Molecular Function	chromatin binding	Interproscan
GO:0005721 all species →	Cellular Component	pericentric heterochromatin	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0035064 all species →	Molecular Function	methylated histone binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.7096.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.