Gene detail

Detailed information of evm.model.Ap4.7170 in Astrangia poculata

Genomic Location: Ap4:56625971...56635364
NR annotation: CAH3042645.1, unnamed protein product, partial [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7170

atggctcaaagtaaaagctttttcgatgatgtcaagaaggaaatggaatgtccagtgtgccaggaacagttcagtgaaatcaaagatccgaagattttaaaatgctttcatacgttttgcaaatcctgtctggaaggttggcttcgtcagcagggcggtggagcgttgagttgcccgaaatgtcgtcaaatcaccgaatgcccgaacaacaacatcagcagtcttccatccaacctgttttacaagcaaatggtggacattgtagaggcttacagtggacaaggacgagaagattcaccacaatgtggaaactgcgacgaaacaaagtcgttgaagttttattgttcggattgcaacttcttcctgtgtgaagactgtgctgggggacataaaaagtggaaagttcttagtggtcatcacgttaaagaaattggaaacttcaagtcaagtgatgcgcaagattacgctcggaaggctaacgtttgtaagcaacacaaagatgaattcaggttttactgcgaaccgtgtaaaatttgcatttgtcgtgactgcgccatattggatcatgaagatcacaagaaaatttccctggagaaaggacttgaaaagaagaaatcacaactagaggttaaaataagtaaagttcaggcaaaccgctctcgtttaacgaaccataaggactcactggagaaacaacgactgaaagtaaacaacagcttcgaacaagcgacgacagaactccaggaggtctcaaaacgctgcataaatttgatacgcgagcacgaagcaagcgtgacagaacagttaatcaaccagaaagaaagttttcaagctgaatttttaaagcagatgaacaacgtggatgggaaactgaccgaaattgacagcagtttagagtttggggaagaagttcttttcagaaataatttaccggagattttaaacttagaagaaatgttggagaaaaggcttcaggaactttcggttccttttgagccgaaccttaatttccctgatgtcagatacaatccaaatgatgtgtcgtccttagtagacgcccctggaaagttacttacgaccaacaccgaaccttccttgtcagtagctgaaggccggggtcttactgaggctttacaaggcgattgtggtacatttacagttactacaaaggatgcaaagaaccagacaacttacagtgaaatcgacgaaatacatgttgcgattagttctcggaagagtagagacaccttgaaaacttgcgtaacagattcaagaaatggccagtatcatgtaaagtacaaatccgatgctggaggtgatttcaatgtgtccattacagtacgaggcaaagctatcaagggaagtccgttcaagttgacagtgagagagagaacaacaaaaggatttttagaacctgatctgactcaatacagcccagtaaaaaaatttcagcaaaatgaagtaactcgtcagcctgaaccagacaaaaccctgccaatcgagcagtacggagaagaacaccacttggaagaagctctgcagttccttgaaatagagaaagtagaaataaaaagtgaatcaaagcgaggcaagggcactgaagaatttcaagaatcgagtgatcttgatcttgaccttgacctggatgttgatgaatcaaattcttccacagatgccaaaagtaaagcactactagaaacttacataggtaaggtaaaagtgtctgtttacaagggagatctcaccagtgaagaggttgatgtcgttgtgaacgccgccaacgatcgccttcaacatacaggaggtgtggctaaggaaatacttgacaggggaggaaaagtcatcgagaaagagtccaacaagatcataaagcaacaaggaccactaaaatatggtgaggcagttgcaactaatgctggaaagctaccttgcaagaaggttgtccatactgtagggcccgaatatcgaaatgtaggattgtcccagagcaggtacctccttcgccgagcctgtttaaacagtttcaaaattgcacaggaattaaaaatgacctccatagcattgccagccattggctccggcatttatggcatgccgaaagattcgtgtgctgaggtgatgtttgatgctgcagaggagattgttagacaaggcgactcaaagaagaaaacgataactgacatacgatttgtgaacacagatgacccgtcagtgcaagctttcagaaaggagtttatctctagatatggaaatagccaagaacaatctgcaagtaaaaagctggccgaaggaaggattactaaaacgccatgtactggcgctaaagttgctaattcctctgcaatgtcgttttcaagaccagacagcagcacaaacaaaaacaaaatcatctttggcaacaatcgtacaacggcgaatccgagtagccatcattgcaacactacttttggcaattctgctgctgaagacgatcatcctttgagtggctccagtcatccgtggttttttataaacacatcgtacagtagcgcagtaaaaaaacattcgggtagcaatgatgcaggatcgtccatagctcgggagcctggaggtgcaggcaagacgggatttactcaccctctaggaacaacgacccagcaaaaaaatgaagattctgcttctggcggagcaggctcagaaaccgaatgccccatttgccttgatagatgcctggtgggttatgaagtgcagagtgttattcaaggaaatcagcctaaaggaacaatgcagtttcagaaaagtcttgaaagccttcctggctattatgattgtggcacaatcgttatccactattcatttccatcgggagttcaaggcctggaacatccaaatcctggccgaaggtacgacggcacccaacgtactgcttatctgcctgataaccgggaaggcaacgaggttctgcatcttttgaaaagagcttttgatgctcgcttggttttcaccgttggaacctcagtaacaacaggacgacaaaaccaagtcacctggaatgatattcaccataagacaagtttgagtggaggtcctcaggggtttggatatcccgacccagactatttgaggcaagtgaaagaagatctggctgccaagggtatccgctga

Transcript

evm.model.Ap4.7170

ATGGCTCAAAGTAAAAGCTTTTTCGATGATGTCAAGAAGGAAATGGAATGTCCAGTGTGCCAGGAACAGTTCAGTGAAATCAAAGATCCGAAGATTTTAAAATGCTTTCATACGTTTTGCAAATCCTGTCTGGAAGGTTGGCTTCGTCAGCAGGGCGGTGGAGCGTTGAGTTGCCCGAAATGTCGTCAAATCACCGAATGCCCGAACAACAACATCAGCAGTCTTCCATCCAACCTGTTTTACAAGCAAATGGTGGACATTGTAGAGGCTTACAGTGGACAAGGACGAGAAGATTCACCACAATGTGGAAACTGCGACGAAACAAAGTCGTTGAAGTTTTATTGTTCGGATTGCAACTTCTTCCTGTGTGAAGACTGTGCTGGGGGACATAAAAAGTGGAAAGTTCTTAGTGGTCATCACGTTAAAGAAATTGGAAACTTCAAGTCAAGTGATGCGCAAGATTACGCTCGGAAGGCTAACGTTTGTAAGCAACACAAAGATGAATTCAGGTTTTACTGCGAACCGTGTAAAATTTGCATTTGTCGTGACTGCGCCATATTGGATCATGAAGATCACAAGAAAATTTCCCTGGAGAAAGGACTTGAAAAGAAGAAATCACAACTAGAGGTTAAAATAAGTAAAGTTCAGGCAAACCGCTCTCGTTTAACGAACCATAAGGACTCACTGGAGAAACAACGACTGAAAGTAAACAACAGCTTCGAACAAGCGACGACAGAACTCCAGGAGGTCTCAAAACGCTGCATAAATTTGATACGCGAGCACGAAGCAAGCGTGACAGAACAGTTAATCAACCAGAAAGAAAGTTTTCAAGCTGAATTTTTAAAGCAGATGAACAACGTGGATGGGAAACTGACCGAAATTGACAGCAGTTTAGAGTTTGGGGAAGAAGTTCTTTTCAGAAATAATTTACCGGAGATTTTAAACTTAGAAGAAATGTTGGAGAAAAGGCTTCAGGAACTTTCGGTTCCTTTTGAGCCGAACCTTAATTTCCCTGATGTCAGATACAATCCAAATGATGTGTCGTCCTTAGTAGACGCCCCTGGAAAGTTACTTACGACCAACACCGAACCTTCCTTGTCAGTAGCTGAAGGCCGGGGTCTTACTGAGGCTTTACAAGGCGATTGTGGTACATTTACAGTTACTACAAAGGATGCAAAGAACCAGACAACTTACAGTGAAATCGACGAAATACATGTTGCGATTAGTTCTCGGAAGAGTAGAGACACCTTGAAAACTTGCGTAACAGATTCAAGAAATGGCCAGTATCATGTAAAGTACAAATCCGATGCTGGAGGTGATTTCAATGTGTCCATTACAGTACGAGGCAAAGCTATCAAGGGAAGTCCGTTCAAGTTGACAGTGAGAGAGAGAACAACAAAAGGATTTTTAGAACCTGATCTGACTCAATACAGCCCAGTAAAAAAATTTCAGCAAAATGAAGTAACTCGTCAGCCTGAACCAGACAAAACCCTGCCAATCGAGCAGTACGGAGAAGAACACCACTTGGAAGAAGCTCTGCAGTTCCTTGAAATAGAGAAAGTAGAAATAAAAAGTGAATCAAAGCGAGGCAAGGGCACTGAAGAATTTCAAGAATCGAGTGATCTTGATCTTGACCTTGACCTGGATGTTGATGAATCAAATTCTTCCACAGATGCCAAAAGTAAAGCACTACTAGAAACTTACATAGGTAAGGTAAAAGTGTCTGTTTACAAGGGAGATCTCACCAGTGAAGAGGTTGATGTCGTTGTGAACGCCGCCAACGATCGCCTTCAACATACAGGAGGTGTGGCTAAGGAAATACTTGACAGGGGAGGAAAAGTCATCGAGAAAGAGTCCAACAAGATCATAAAGCAACAAGGACCACTAAAATATGGTGAGGCAGTTGCAACTAATGCTGGAAAGCTACCTTGCAAGAAGGTTGTCCATACTGTAGGGCCCGAATATCGAAATGTAGGATTGTCCCAGAGCAGGTACCTCCTTCGCCGAGCCTGTTTAAACAGTTTCAAAATTGCACAGGAATTAAAAATGACCTCCATAGCATTGCCAGCCATTGGCTCCGGCATTTATGGCATGCCGAAAGATTCGTGTGCTGAGGTGATGTTTGATGCTGCAGAGGAGATTGTTAGACAAGGCGACTCAAAGAAGAAAACGATAACTGACATACGATTTGTGAACACAGATGACCCGTCAGTGCAAGCTTTCAGAAAGGAGTTTATCTCTAGATATGGAAATAGCCAAGAACAATCTGCAAGTAAAAAGCTGGCCGAAGGAAGGATTACTAAAACGCCATGTACTGGCGCTAAAGTTGCTAATTCCTCTGCAATGTCGTTTTCAAGACCAGACAGCAGCACAAACAAAAACAAAATCATCTTTGGCAACAATCGTACAACGGCGAATCCGAGTAGCCATCATTGCAACACTACTTTTGGCAATTCTGCTGCTGAAGACGATCATCCTTTGAGTGGCTCCAGTCATCCGTGGTTTTTTATAAACACATCGTACAGTAGCGCAGTAAAAAAACATTCGGGTAGCAATGATGCAGGATCGTCCATAGCTCGGGAGCCTGGAGGTGCAGGCAAGACGGGATTTACTCACCCTCTAGGAACAACGACCCAGCAAAAAAATGAAGATTCTGCTTCTGGCGGAGCAGGCTCAGAAACCGAATGCCCCATTTGCCTTGATAGATGCCTGGTGGGTTATGAAGTGCAGAGTGTTATTCAAGGAAATCAGCCTAAAGGAACAATGCAGTTTCAGAAAAGTCTTGAAAGCCTTCCTGGCTATTATGATTGTGGCACAATCGTTATCCACTATTCATTTCCATCGGGAGTTCAAGGCCTGGAACATCCAAATCCTGGCCGAAGGTACGACGGCACCCAACGTACTGCTTATCTGCCTGATAACCGGGAAGGCAACGAGGTTCTGCATCTTTTGAAAAGAGCTTTTGATGCTCGCTTGGTTTTCACCGTTGGAACCTCAGTAACAACAGGACGACAAAACCAAGTCACCTGGAATGATATTCACCATAAGACAAGTTTGAGTGGAGGTCCTCAGGGGTTTGGATATCCCGACCCAGACTATTTGAGGCAAGTGAAAGAAGATCTGGCTGCCAAGGGTATCCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UIR3	E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8TDB6	E3 ubiquitin-protein ligase DTX3L OS=Homo sapiens OX=9606 GN=DTX3L PE=1 SV=1
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001497 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 activity\|RBR · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00643 all species →	zf-B_box	B-box zinc finger	Domain	Interproscan
PF13445 all species →	zf-RING_UBOX	RING-type zinc-finger	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR000315 all species →	Domain	B-box-type zinc finger	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR027370 all species →	Domain	Zinc finger, RING-type, eukaryotic	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.7170.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.