Gene detail

Detailed information of evm.model.Ap4.7180 in Astrangia poculata

Genomic Location: Ap4:56697053...56702597
NR annotation: XP_020627169.1, uncharacterized protein LOC110064456 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7180

atgggccgggggatggtggtggttttcttttatttgttaatacagctattctgtcttcacttgaaagaaagaaacaaacaaacaagaagaggcattgagtggattggtaccagtgaaagttttacaatgtcaggagctttcaaacaagtggagatgtcccgtacctacttacaacaggctataaatcaatctggtggaatatcagtaaatgagtctcgtgttggtggcgaggcacagaaagaagatctgaaccagaccagccccggggtaaatgcaatgcagaataaagaaaatcaccgtgaagaagaaccaaacgaaacacagtccaaccacgttgccactgtcaaacccactgaaattcaaagttttgaggtcgagccgaagttcataaaagtgtttgtcaaagcacacgaaacagaaataaacgacattgaagccgtataccacgtgaaggtaccaagagaggccaaagaaggcaaaatcagcttgatcccaaaagatgcgtgcagcactgaagaatacgaaaaggcgtgcgacctgtttattgacctgtaccaacaaatgactcagaatatgaagatggagcgcttctccctcaagagtgaaaaacatgttgtcattgcgcgaaagaaaattcaagaaatgatgaaaaagttcccagttttggtggagaaagggcaggataaaaagcattgggagttgtacggagaagaacaccacttggaagaagccctggagttccttagaaaagaagaagtggaaataaagagggattcaaagcgaggcaagggcactgaagaatttcaaggaacgagagatcatgaagacgcgatggatgttgatccacccggttcttccagaggtgtccgaagtaacgatctgctagaaacataccgaggtaaagtaaaggtgtctgtttaccagggagacctaactgatgaacgagttgatgttattgtaaacgctgccaacaaccgccttcgacacgatggaggcgtggctaaggccatactcgacagagggggaaaagcaatcgagaaggagtctaacaagattgtagggaaaggtggacctctgaaagatggtcaagttgctataacaagtgctggaaaactacgctgcaagaaggttgtccatgctgtaggaccagactgccgaaatgtaggattgtccaacagccaaaaagtccttcgccaagcctgcataaacagttttaaaatcgcagaagaatggaatatgacctccatagcattgccagctattggttccggcatttatgatatgccgaaagacgcatgcgctaaagtcatgtttgatgccctcgaggagtttctcagacaaggtgatccaaagaagaaaacgatctctgacatcagattcgtgaacatagatgatccgtcagtgcaagcattcagaaaggagttcatctctagatatggaaatagccaaggacattctgacagtaaagtgctgtccggaggaaaagctataaaaaggccaccaactggtgctgatgctgccaacttctctggaatgtcgccaacacgaccagaccgcggtaaaaacaaaactaaaaataactttgacaacaattggtcaacagcaaacccgagtagccatcatcacaacactgcctttggcttttctgctgctgaaaatgatcactctttgagaggctccaatcatcagtcgttttcaaacacatcttacagtgacgcagtaaagacaaattcggtcggtggtattgatacaagatcgcccacagctcaagagcctggaagtacaggcacaacgggattctctctccctccaggaaactcaacgcaacgaaaagatgaagattctgctgctggcggagcaggctcagaatccgaatgtcccatttgccttgataccataaccagtgcacgaagtctaaagtgtaaacacgtcttctgtacagagtgcttggagacagccttaaagcacgacaacagatgccccgtgtgtaaagaagtgcagggtgtcataaaaggaaaccaaccccaaggacagatgcagtttcacaaaagccattacagccttcccggctaccacgattgtggtacaatcaccatcgactattactttccatcgggaactcaaggccaggaacatccaaaccctggccgatggtacgaaggcacctcacgtactgcttatctgcctgataaccgagaaggtaacgaggtgctgcagcttttgagaagagcttttgatgctcgattggttttcaccgttggaacgtcagtaacaacaggacgacaaaaccaggtcacttggaacgatattcaccacaagacaaatatgtctggaggtcctcagcggtttggatatcccgacccagactatctgaggcgggtcaaagaagacctggctgccaagggaatccgctga

Transcript

evm.model.Ap4.7180

ATGGGCCGGGGGATGGTGGTGGTTTTCTTTTATTTGTTAATACAGCTATTCTGTCTTCACTTGAAAGAAAGAAACAAACAAACAAGAAGAGGCATTGAGTGGATTGGTACCAGTGAAAGTTTTACAATGTCAGGAGCTTTCAAACAAGTGGAGATGTCCCGTACCTACTTACAACAGGCTATAAATCAATCTGGTGGAATATCAGTAAATGAGTCTCGTGTTGGTGGCGAGGCACAGAAAGAAGATCTGAACCAGACCAGCCCCGGGGTAAATGCAATGCAGAATAAAGAAAATCACCGTGAAGAAGAACCAAACGAAACACAGTCCAACCACGTTGCCACTGTCAAACCCACTGAAATTCAAAGTTTTGAGGTCGAGCCGAAGTTCATAAAAGTGTTTGTCAAAGCACACGAAACAGAAATAAACGACATTGAAGCCGTATACCACGTGAAGGTACCAAGAGAGGCCAAAGAAGGCAAAATCAGCTTGATCCCAAAAGATGCGTGCAGCACTGAAGAATACGAAAAGGCGTGCGACCTGTTTATTGACCTGTACCAACAAATGACTCAGAATATGAAGATGGAGCGCTTCTCCCTCAAGAGTGAAAAACATGTTGTCATTGCGCGAAAGAAAATTCAAGAAATGATGAAAAAGTTCCCAGTTTTGGTGGAGAAAGGGCAGGATAAAAAGCATTGGGAGTTGTACGGAGAAGAACACCACTTGGAAGAAGCCCTGGAGTTCCTTAGAAAAGAAGAAGTGGAAATAAAGAGGGATTCAAAGCGAGGCAAGGGCACTGAAGAATTTCAAGGAACGAGAGATCATGAAGACGCGATGGATGTTGATCCACCCGGTTCTTCCAGAGGTGTCCGAAGTAACGATCTGCTAGAAACATACCGAGGTAAAGTAAAGGTGTCTGTTTACCAGGGAGACCTAACTGATGAACGAGTTGATGTTATTGTAAACGCTGCCAACAACCGCCTTCGACACGATGGAGGCGTGGCTAAGGCCATACTCGACAGAGGGGGAAAAGCAATCGAGAAGGAGTCTAACAAGATTGTAGGGAAAGGTGGACCTCTGAAAGATGGTCAAGTTGCTATAACAAGTGCTGGAAAACTACGCTGCAAGAAGGTTGTCCATGCTGTAGGACCAGACTGCCGAAATGTAGGATTGTCCAACAGCCAAAAAGTCCTTCGCCAAGCCTGCATAAACAGTTTTAAAATCGCAGAAGAATGGAATATGACCTCCATAGCATTGCCAGCTATTGGTTCCGGCATTTATGATATGCCGAAAGACGCATGCGCTAAAGTCATGTTTGATGCCCTCGAGGAGTTTCTCAGACAAGGTGATCCAAAGAAGAAAACGATCTCTGACATCAGATTCGTGAACATAGATGATCCGTCAGTGCAAGCATTCAGAAAGGAGTTCATCTCTAGATATGGAAATAGCCAAGGACATTCTGACAGTAAAGTGCTGTCCGGAGGAAAAGCTATAAAAAGGCCACCAACTGGTGCTGATGCTGCCAACTTCTCTGGAATGTCGCCAACACGACCAGACCGCGGTAAAAACAAAACTAAAAATAACTTTGACAACAATTGGTCAACAGCAAACCCGAGTAGCCATCATCACAACACTGCCTTTGGCTTTTCTGCTGCTGAAAATGATCACTCTTTGAGAGGCTCCAATCATCAGTCGTTTTCAAACACATCTTACAGTGACGCAGTAAAGACAAATTCGGTCGGTGGTATTGATACAAGATCGCCCACAGCTCAAGAGCCTGGAAGTACAGGCACAACGGGATTCTCTCTCCCTCCAGGAAACTCAACGCAACGAAAAGATGAAGATTCTGCTGCTGGCGGAGCAGGCTCAGAATCCGAATGTCCCATTTGCCTTGATACCATAACCAGTGCACGAAGTCTAAAGTGTAAACACGTCTTCTGTACAGAGTGCTTGGAGACAGCCTTAAAGCACGACAACAGATGCCCCGTGTGTAAAGAAGTGCAGGGTGTCATAAAAGGAAACCAACCCCAAGGACAGATGCAGTTTCACAAAAGCCATTACAGCCTTCCCGGCTACCACGATTGTGGTACAATCACCATCGACTATTACTTTCCATCGGGAACTCAAGGCCAGGAACATCCAAACCCTGGCCGATGGTACGAAGGCACCTCACGTACTGCTTATCTGCCTGATAACCGAGAAGGTAACGAGGTGCTGCAGCTTTTGAGAAGAGCTTTTGATGCTCGATTGGTTTTCACCGTTGGAACGTCAGTAACAACAGGACGACAAAACCAGGTCACTTGGAACGATATTCACCACAAGACAAATATGTCTGGAGGTCCTCAGCGGTTTGGATATCCCGACCCAGACTATCTGAGGCGGGTCAAAGAAGACCTGGCTGCCAAGGGAATCCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1
Q80V91	Probable E3 ubiquitin-protein ligase DTX3 OS=Mus musculus OX=10090 GN=Dtx3 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06058	DTX; deltex	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.