Gene detail

Detailed information of evm.model.Ap4.7191 in Astrangia poculata

Genomic Location: Ap4:56791455...56818620
NR annotation: XP_020631325.1, serine/threonine-protein kinase tousled-like 2 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7191

atggccgccagtagtctgccagacgtcgatactcagaaaagggaaataacagagctaatgagaaagtcatatgttaagggtgatatctggtatcttgttgattgtcgttggttaaagcaatggaaaaagtttgtcggatttgatatgtgggatcagtttggtgcaggagaagagttaaataatcctggtcccatagataattcaagtctcctttcagctgatagctttactctgaaggatcatcttattgatgaacttgattttaactttttacctcaagaagcatggtttaagcttgtgtcgtggtatggaatagtttctgatcatcaggcactcccaagaaaggtggtggaacatggtatgtacactaaaagcctgaaagttgaagtgtacctgatggagttcaaactttgttggaagtctgatcccaaaacagtagtcacaaggcagtttagtagaggagacactactggtcatgtaatgtcggaaatgagaaaaatatttaccattgcaaaagaggcagaaacaagagtgtgcaccaagtatatgagcaatacgtatgaacttctcagtaacctgaaatacactgtagaagatgctggtctctatcaaggacagcccacaatcgcctccaaactggttcagagtagtaattatgaaaagtcagctgcagcattacaggaaaaacccaaatccaaacccaaaaagaaggccaccgaaggtcaagaagctttaagaccgatctccggattaaaatcaaagacgtctcctagggagacgaaaacagaaacaaaagtacctgtatcttcagttggtaatggagtcacgagacagcagggagactcagaaagaagcaaccataaaaagaatgttctgacagagagtaaatattctgcgatcgacgctggacctgtgaaacccactaaactacttaatgttaaacaagactccaagcaacttgatcaaggtaccaacgcaaatgacaactggcttcaagtacagtgcgatgttatgcagatgcgcaaagcgctcaacgaagaaaaacttgctcgcaatatcagaaagcaggaattattggaaaaagagacaggtctgataaatgcattacaaagtacattatttgaagagcaacaagcaagaacaagagttgaggaggagttgagcgaggcaaggagtgcatgtaacgagcttgaaggattgcaaaatgaacttgtgcagactcgtcaaacgctcgaagacgaaatacggttgcgcaacacgaaagagcaggaagtgagagaaaaggaaacgcgtttagaacaactacaggagacgttagccgaagagcaacaggagagaactagattagaagaaagattacaagacgaaatgctgtcgagtcaatctcgccaacaagagcttcaaacgaaagagaacgctatcagagaacagcagcgtcttttggaagaagaacgccaacagaaggcaactttggaagcaaggctaagaaacttggaacttcaaatgcaagaggaaaggaacaggcatcagtccacagaaagacagttacaatcagctgtgtctgtggcccaagaggaactgactgagtaccagcgtcgtcaaccacgtgactggatcattcagcgagaggaaatacttttgagtgacactgtcttgggcaaaggcgcctggggcaatgtgcgcgggggcacatttcgtagttgccaagtggctgttaaagaaattcacgagctaattctctcacctcataatcgaagactgtttgaacgagaaatgagcatcgcgtcctgctgtcgccatccaaatcttttacagtttattggcgctacaaacgacgatggcagtcctttgtttgtcactgaactactcgacactagtttacgacacctgttatcccagcgagcgttaaatcaacaggagattgtcagccttgccttggacgtcgctaaaggattaaattaccttcaccttaataagccgcttcccatcatacatcgggacatcagcagcgccaacgtgttgctatggagacgagatgagtgtttgagagccaagctatctgactatggagctgcaaacttcatgcgtcagtgcatgacagtgaacccaggcgcaataatttattcggcacccgaggccctcacttcgcatcagtcacccaaggtaaaaaatttctcttcctttaatgtcaacaacaggaaacttaagggaagacaaaaagcacactaa

Transcript

evm.model.Ap4.7191

ATGGCCGCCAGTAGTCTGCCAGACGTCGATACTCAGAAAAGGGAAATAACAGAGCTAATGAGAAAGTCATATGTTAAGGGTGATATCTGGTATCTTGTTGATTGTCGTTGGTTAAAGCAATGGAAAAAGTTTGTCGGATTTGATATGTGGGATCAGTTTGGTGCAGGAGAAGAGTTAAATAATCCTGGTCCCATAGATAATTCAAGTCTCCTTTCAGCTGATAGCTTTACTCTGAAGGATCATCTTATTGATGAACTTGATTTTAACTTTTTACCTCAAGAAGCATGGTTTAAGCTTGTGTCGTGGTATGGAATAGTTTCTGATCATCAGGCACTCCCAAGAAAGGTGGTGGAACATGGTATGTACACTAAAAGCCTGAAAGTTGAAGTGTACCTGATGGAGTTCAAACTTTGTTGGAAGTCTGATCCCAAAACAGTAGTCACAAGGCAGTTTAGTAGAGGAGACACTACTGGTCATGTAATGTCGGAAATGAGAAAAATATTTACCATTGCAAAAGAGGCAGAAACAAGAGTGTGCACCAAGTATATGAGCAATACGTATGAACTTCTCAGTAACCTGAAATACACTGTAGAAGATGCTGGTCTCTATCAAGGACAGCCCACAATCGCCTCCAAACTGGTTCAGAGTAGTAATTATGAAAAGTCAGCTGCAGCATTACAGGAAAAACCCAAATCCAAACCCAAAAAGAAGGCCACCGAAGGTCAAGAAGCTTTAAGACCGATCTCCGGATTAAAATCAAAGACGTCTCCTAGGGAGACGAAAACAGAAACAAAAGTACCTGTATCTTCAGTTGGTAATGGAGTCACGAGACAGCAGGGAGACTCAGAAAGAAGCAACCATAAAAAGAATGTTCTGACAGAGAGTAAATATTCTGCGATCGACGCTGGACCTGTGAAACCCACTAAACTACTTAATGTTAAACAAGACTCCAAGCAACTTGATCAAGGTACCAACGCAAATGACAACTGGCTTCAAGTACAGTGCGATGTTATGCAGATGCGCAAAGCGCTCAACGAAGAAAAACTTGCTCGCAATATCAGAAAGCAGGAATTATTGGAAAAAGAGACAGGTCTGATAAATGCATTACAAAGTACATTATTTGAAGAGCAACAAGCAAGAACAAGAGTTGAGGAGGAGTTGAGCGAGGCAAGGAGTGCATGTAACGAGCTTGAAGGATTGCAAAATGAACTTGTGCAGACTCGTCAAACGCTCGAAGACGAAATACGGTTGCGCAACACGAAAGAGCAGGAAGTGAGAGAAAAGGAAACGCGTTTAGAACAACTACAGGAGACGTTAGCCGAAGAGCAACAGGAGAGAACTAGATTAGAAGAAAGATTACAAGACGAAATGCTGTCGAGTCAATCTCGCCAACAAGAGCTTCAAACGAAAGAGAACGCTATCAGAGAACAGCAGCGTCTTTTGGAAGAAGAACGCCAACAGAAGGCAACTTTGGAAGCAAGGCTAAGAAACTTGGAACTTCAAATGCAAGAGGAAAGGAACAGGCATCAGTCCACAGAAAGACAGTTACAATCAGCTGTGTCTGTGGCCCAAGAGGAACTGACTGAGTACCAGCGTCGTCAACCACGTGACTGGATCATTCAGCGAGAGGAAATACTTTTGAGTGACACTGTCTTGGGCAAAGGCGCCTGGGGCAATGTGCGCGGGGGCACATTTCGTAGTTGCCAAGTGGCTGTTAAAGAAATTCACGAGCTAATTCTCTCACCTCATAATCGAAGACTGTTTGAACGAGAAATGAGCATCGCGTCCTGCTGTCGCCATCCAAATCTTTTACAGTTTATTGGCGCTACAAACGACGATGGCAGTCCTTTGTTTGTCACTGAACTACTCGACACTAGTTTACGACACCTGTTATCCCAGCGAGCGTTAAATCAACAGGAGATTGTCAGCCTTGCCTTGGACGTCGCTAAAGGATTAAATTACCTTCACCTTAATAAGCCGCTTCCCATCATACATCGGGACATCAGCAGCGCCAACGTGTTGCTATGGAGACGAGATGAGTGTTTGAGAGCCAAGCTATCTGACTATGGAGCTGCAAACTTCATGCGTCAGTGCATGACAGTGAACCCAGGCGCAATAATTTATTCGGCACCCGAGGCCCTCACTTCGCATCAGTCACCCAAGGTAAAAAATTTCTCTTCCTTTAATGTCAACAACAGGAAACTTAAGGGAAGACAAAAAGCACACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QR55	Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
B2GUZ1	Ubiquitin carboxyl-terminal hydrolase 4 OS=Rattus norvegicus OX=10116 GN=Usp4 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000208 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14836 all species →	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR050167 all species →	Family	Serine/threonine-protein kinase	Interproscan
IPR028135 all species →	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR008266 all species →	Active_site	Tyrosine-protein kinase, active site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23257 all species →	SERINE-THREONINE PROTEIN KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.7191.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.