Gene detail

Detailed information of evm.model.Ap4.7197 in Astrangia poculata

Genomic Location: Ap4:56848727...56852991
NR annotation: RUA05525.1, hypothetical protein DSY43_04445 [Gammaproteobacteria bacterium]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7197

atggctaatactccgttattaggtgagactcctactaatatgtatattgataaaggtgcaaattctcctgccgaaattaattccaaaacaagtcctcaccctcttcatgaaattaataagttaaaaggtttcaaaatagctagcctgaacatcacaagtctcataaaacatatcgacgagcttaaaatgttaatggagaacaactcccttgacatacttgcaattaatgaaacaagacttgatgaatcgatcaatgacaatgaagtagcactaccaggctatagcataatacgtaaagatcgcaaccgtcaaggaggcggtgtagctatgtatattaaagaaaacattgcttttggcgagagggaagatcttggatgtgtacacctggagtcactaaccatcgaaatctcagctaaatttacccagccattttgtgttagcacatggtaccgacctccaggatctgacctcgacctcttcgacaaacttgatgcactcttagctaaactagataatgtaaataaggaatccgtgatacttggtgattttaactgcaacttattagaagctaatgcaagtttacatacgaaaagggatgccttgaagaaacgagccgtaaaaaataactcccaagcgaactggaacgcttatcgcaaagccaaaaacgaactaaacaggaaaatgaaggaaactaaacgtgattacttcataaataagataaatgaaagttgcaatgatataaaaaacacctggaaagtcttaaatgcagctatgagtaaaacatcgaaagtaatccgaattaataagctaaaggcgaatgaagatgacattactgaccccaaagaaattgcaaatctgctcaataaatattttgtaaacattggaccatctcttgcagaacatctacctactcctaaccatgattccatagaactccatacagaaagatcacaatcctttaaatttgagcaaataaattgcaacatagttgaagaaaccatcagaaaactctcagcaaacaaagctactggtctggacaagctcccggcatcgattttcaagcttgcctgtaatgttatttccacgccactctcccacatctttaatgcctcaatttcaagtggcatctttcctgatgattggaaggtcgctaaagtacttcccaagtataagtctaaagatagatgtgatccaaatgaaaaccttacttggaaggaacatgtttctaatattagtaaaaaagttagcaagggcttaggtgtcctaaggcgaacccgtgaaatactccctaatgattctttaaatcaaatctataaatcaattatacaacctcactttgattactgctcgcctgtttggcacacatgtgataaagggttacggacaaaattacaaagactacaaaatcgagcagcaagaattatcactaggtctggctatgaagtcagatctgctgatctaagaaaggacctaggatggcagcctctagaagatcgctggtaccaacaaaaagtaacaactatgtacaaaattgccaacaatctggcaccacactcgttggcacgaaacttcattccagttagagagactcatcactatgaaactagaggctgccatataaacctatgtgttccaaaacctaacacagagttccttaaaaggagcctcgcctataacggagtagtagcatggaatgcacttccttcctgttggaaaaggtttattgagaagacgaaggtctgtccaaagtgcaagcagggaagtctttttcgaggaaaccaaccagttgggtacatgacatggaggactgagacaaataattcacttccggggtacgaggagtgtggaaccattttcataaccttcaacttcaagggaggagttcaaggtccagagcatccaaatccaggacagtcttactgtggtttatactgtacatcctacctccctgacagcccagcaggacaagaactgtgcaacctgttgagaatggcttttgattcacggttgatatttaccattggaaagtgtcccgctacaggcgaagaggataaaattgtgtggaatggcatcgaactgaaaacgagtcgtagctga

Transcript

evm.model.Ap4.7197

ATGGCTAATACTCCGTTATTAGGTGAGACTCCTACTAATATGTATATTGATAAAGGTGCAAATTCTCCTGCCGAAATTAATTCCAAAACAAGTCCTCACCCTCTTCATGAAATTAATAAGTTAAAAGGTTTCAAAATAGCTAGCCTGAACATCACAAGTCTCATAAAACATATCGACGAGCTTAAAATGTTAATGGAGAACAACTCCCTTGACATACTTGCAATTAATGAAACAAGACTTGATGAATCGATCAATGACAATGAAGTAGCACTACCAGGCTATAGCATAATACGTAAAGATCGCAACCGTCAAGGAGGCGGTGTAGCTATGTATATTAAAGAAAACATTGCTTTTGGCGAGAGGGAAGATCTTGGATGTGTACACCTGGAGTCACTAACCATCGAAATCTCAGCTAAATTTACCCAGCCATTTTGTGTTAGCACATGGTACCGACCTCCAGGATCTGACCTCGACCTCTTCGACAAACTTGATGCACTCTTAGCTAAACTAGATAATGTAAATAAGGAATCCGTGATACTTGGTGATTTTAACTGCAACTTATTAGAAGCTAATGCAAGTTTACATACGAAAAGGGATGCCTTGAAGAAACGAGCCGTAAAAAATAACTCCCAAGCGAACTGGAACGCTTATCGCAAAGCCAAAAACGAACTAAACAGGAAAATGAAGGAAACTAAACGTGATTACTTCATAAATAAGATAAATGAAAGTTGCAATGATATAAAAAACACCTGGAAAGTCTTAAATGCAGCTATGAGTAAAACATCGAAAGTAATCCGAATTAATAAGCTAAAGGCGAATGAAGATGACATTACTGACCCCAAAGAAATTGCAAATCTGCTCAATAAATATTTTGTAAACATTGGACCATCTCTTGCAGAACATCTACCTACTCCTAACCATGATTCCATAGAACTCCATACAGAAAGATCACAATCCTTTAAATTTGAGCAAATAAATTGCAACATAGTTGAAGAAACCATCAGAAAACTCTCAGCAAACAAAGCTACTGGTCTGGACAAGCTCCCGGCATCGATTTTCAAGCTTGCCTGTAATGTTATTTCCACGCCACTCTCCCACATCTTTAATGCCTCAATTTCAAGTGGCATCTTTCCTGATGATTGGAAGGTCGCTAAAGTACTTCCCAAGTATAAGTCTAAAGATAGATGTGATCCAAATGAAAACCTTACTTGGAAGGAACATGTTTCTAATATTAGTAAAAAAGTTAGCAAGGGCTTAGGTGTCCTAAGGCGAACCCGTGAAATACTCCCTAATGATTCTTTAAATCAAATCTATAAATCAATTATACAACCTCACTTTGATTACTGCTCGCCTGTTTGGCACACATGTGATAAAGGGTTACGGACAAAATTACAAAGACTACAAAATCGAGCAGCAAGAATTATCACTAGGTCTGGCTATGAAGTCAGATCTGCTGATCTAAGAAAGGACCTAGGATGGCAGCCTCTAGAAGATCGCTGGTACCAACAAAAAGTAACAACTATGTACAAAATTGCCAACAATCTGGCACCACACTCGTTGGCACGAAACTTCATTCCAGTTAGAGAGACTCATCACTATGAAACTAGAGGCTGCCATATAAACCTATGTGTTCCAAAACCTAACACAGAGTTCCTTAAAAGGAGCCTCGCCTATAACGGAGTAGTAGCATGGAATGCACTTCCTTCCTGTTGGAAAAGGTTTATTGAGAAGACGAAGGTCTGTCCAAAGTGCAAGCAGGGAAGTCTTTTTCGAGGAAACCAACCAGTTGGGTACATGACATGGAGGACTGAGACAAATAATTCACTTCCGGGGTACGAGGAGTGTGGAACCATTTTCATAACCTTCAACTTCAAGGGAGGAGTTCAAGGTCCAGAGCATCCAAATCCAGGACAGTCTTACTGTGGTTTATACTGTACATCCTACCTCCCTGACAGCCCAGCAGGACAAGAACTGTGCAACCTGTTGAGAATGGCTTTTGATTCACGGTTGATATTTACCATTGGAAAGTGTCCCGCTACAGGCGAAGAGGATAAAATTGTGTGGAATGGCATCGAACTGAAAACGAGTCGTAGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3P2	Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus OX=10090 GN=Dtx2 PE=1 SV=2
Q23985	Protein deltex OS=Drosophila melanogaster OX=7227 GN=dx PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000001 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03372 all species →	Exo_endo_phos	Endonuclease/Exonuclease/phosphatase family	Domain	Interproscan
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039398 all species →	Family	Deltex family	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR036691 all species →	Homologous_superfamily	Endonuclease/exonuclease/phosphatase superfamily	Interproscan
IPR005135 all species →	Domain	Endonuclease/exonuclease/phosphatase	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.7197.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.