Detailed information of evm.model.Ap4.7201 in Astrangia poculata

Genomic Location: Ap4:56880101...56881617
NR annotation: XP_020627173.1, myb-like protein A [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8R3P2Probable E3 ubiquitin-protein ligase DTX2 OS=Mus musculus OX=10090 GN=Dtx2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000869 (this species only)
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan
PF18102
all species →		DTCDeltex C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR039399
all species →		Homologous_superfamilyDeltex, C-terminal domain superfamilyInterproscan
IPR039396
all species →		DomainDeltex, C-terminalInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR039398
all species →		FamilyDeltex familyInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12622
all species →		DELTEX-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005654
all species →		Cellular ComponentnucleoplasmInterproscan
GO:0007219
all species →		Biological ProcessNotch signaling pathwayInterproscan
GO:0016567
all species →		Biological Processprotein ubiquitinationInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap4.7201.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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