Gene detail

Detailed information of evm.model.Ap4.7215 in Astrangia poculata

Genomic Location: Ap4:56970316...56978754
NR annotation: XP_020627177.1, uncharacterized protein LOC110064464 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7215

atggccgagaaaatgacaaacggagaaggaagttctggaacggtagtttctcgggtggaagatgacattcacatcgacccgacgagtgtttctcgaagcatttatgtgacaggttttctagcgacaacaaaatcggaagagctaattattcattttcagcgtaagaaaaatggcggcggtgatatcgacggtatcattatcagtaagcgaggagctgcagtgataacattcgacagccctgaagttgtccaatcagttgtacagcaggaacaggagtttcaaggagttgctttaaaagtcaaaccgtatgaggaaaccatgacgaggaatgatcataactttgaggtgtttgagctggtgtctgcagagctttgcttggaaactgtggaactcctcacccgggagcaaacgaaaacccttttaaaggaaatcgctggcaaaactggtattgagtggattgataccagtgaaagttttacaatgtcaggagctttcaaacaagtggagatgtcccgtacctacttacaacaggctataaatcaaactggtggaatttcagaattcactcggatgcaaaggaaaaagttacaaccccagaaacgtcaagaaaatgagtctcatttcagtggcgaggaatacgaagaagatctgaaccagaccagccccggggtaaatgcaatgcagaatgaagaaaatctccatgaagaagaaccaaacgaaacacacgccaaccacgttgccactgtcaaaccttcagaaattcatcattttgaggtcgaaccgaagttcataaaagtgtttgtcaaagcacacgaaacagaaataagcgacattgaagccgaataccacgtgaaggtaccaagagaggccaaagaaggcaaaattagcttgacaccaaaggatgtgtccactagtgaggagtacgacaaggcttgcaacctgttcattgacttgtaccaacaaatgactcagattatgaagatggaacgcttctcgctcaaggatgaaaaaaatgttgtcgctgctcgaaagaaaattcacgaaatgagtaaaaaatttccaattctggttgaggtaggacaggataaaaagcactgggagctgtacggagagcatcacgacttggaagcagctctggagttccttaaaaaggagaaggtggaaataaagagggaatcaaaacatggcagggggactgaagaatttcaaggatcgagagattatgaagaggcgatggatgttgatccacccaattctgccaataacggccaaagtaaagaactactggaaactagcataggtaaggtaaaggtgtctgtttacaagggagatcttaccagtgaagaggttgatgtcattgtgaacgccgccaacgatcgccttcaacacttgggaggtgtagccaaggccatacttgacagtggaggaaaagtcattgagaaagagtctaacaagattataaagcaacgaggatcactgaaagacggtgaagctgtcgcaactaatgctggaaggctgccttgcaagaaggttgtgcacgctgtgggtcccgaatatcgaaaagtaggattgtcccagagcaggctcctccttcgccaaacctgtttaaacagttttaaaattgcacaggaattgaaaatgacctccatagcattgccagccattagctccggtatttatggcatgccaaaagatgcgtgtgctgaagtgatgtttgatgccgttgaggagtttgctagacaaggcgattcgaagaagaagacgatcactgacattagattcgtgaacatagatgatcccacagtgcaagcatttaaaaaagagtttgtctctaggtttggtgacaaccatgaccattctgtaagtaaaagcctggctggaggacgggctattaaagtgccaccaacaggcgccgaaggtgctaattcctctgcaatgtcgacttcaagacgaaatcgcggtaaaaacaagagcatctctgacaacagtcgtacaacaaccaccacgagtagccatcaccacagtaccaattctgctgctacagccgatcaccctttgagtggtttcagtaatccgtcgtcttcagacacatcatacagtagggcagtgaagaaaagtgctggtgataataatgcaagagaacccacatctcaggagtctggtggtgcaggcataacggcgctccatctccctccagggggtaaggaagcttctagtactacggaccgaaaagaggaagatccctgtcctatttgtcttgatactataaccagtccacaaacgttgaagtgtaagcatgctttctgctccggatgccttcaaagagccttaaaaacaagcaacaagtgtcccgtgtgtcaagaacctcaaggtgttcttcgaggaaaccagccccctggagaaatgaggtctcgttttgaacgtggtggtgttccaggttacgaagggtacggtacaattgttatcgactatcacttcccatctggaattcaaggacgggaacatcctaaccccggccagtggtttggaggcacgtcccgaactgcttatcttccagatactcgtgaagggagagaggtgttgcaactactacggagagcctttgatgctcgattggtgtttacgattggtacttcaaatacaacaggactttcaaaccaaataacatggaatgatattcatcacaaaactagctggagtggcggcccttatcgatttggatatcctgacccagattacctacggcgagttaaagaagagttggccgctaaaggaatccgctga

Transcript

evm.model.Ap4.7215

ATGGCCGAGAAAATGACAAACGGAGAAGGAAGTTCTGGAACGGTAGTTTCTCGGGTGGAAGATGACATTCACATCGACCCGACGAGTGTTTCTCGAAGCATTTATGTGACAGGTTTTCTAGCGACAACAAAATCGGAAGAGCTAATTATTCATTTTCAGCGTAAGAAAAATGGCGGCGGTGATATCGACGGTATCATTATCAGTAAGCGAGGAGCTGCAGTGATAACATTCGACAGCCCTGAAGTTGTCCAATCAGTTGTACAGCAGGAACAGGAGTTTCAAGGAGTTGCTTTAAAAGTCAAACCGTATGAGGAAACCATGACGAGGAATGATCATAACTTTGAGGTGTTTGAGCTGGTGTCTGCAGAGCTTTGCTTGGAAACTGTGGAACTCCTCACCCGGGAGCAAACGAAAACCCTTTTAAAGGAAATCGCTGGCAAAACTGGTATTGAGTGGATTGATACCAGTGAAAGTTTTACAATGTCAGGAGCTTTCAAACAAGTGGAGATGTCCCGTACCTACTTACAACAGGCTATAAATCAAACTGGTGGAATTTCAGAATTCACTCGGATGCAAAGGAAAAAGTTACAACCCCAGAAACGTCAAGAAAATGAGTCTCATTTCAGTGGCGAGGAATACGAAGAAGATCTGAACCAGACCAGCCCCGGGGTAAATGCAATGCAGAATGAAGAAAATCTCCATGAAGAAGAACCAAACGAAACACACGCCAACCACGTTGCCACTGTCAAACCTTCAGAAATTCATCATTTTGAGGTCGAACCGAAGTTCATAAAAGTGTTTGTCAAAGCACACGAAACAGAAATAAGCGACATTGAAGCCGAATACCACGTGAAGGTACCAAGAGAGGCCAAAGAAGGCAAAATTAGCTTGACACCAAAGGATGTGTCCACTAGTGAGGAGTACGACAAGGCTTGCAACCTGTTCATTGACTTGTACCAACAAATGACTCAGATTATGAAGATGGAACGCTTCTCGCTCAAGGATGAAAAAAATGTTGTCGCTGCTCGAAAGAAAATTCACGAAATGAGTAAAAAATTTCCAATTCTGGTTGAGGTAGGACAGGATAAAAAGCACTGGGAGCTGTACGGAGAGCATCACGACTTGGAAGCAGCTCTGGAGTTCCTTAAAAAGGAGAAGGTGGAAATAAAGAGGGAATCAAAACATGGCAGGGGGACTGAAGAATTTCAAGGATCGAGAGATTATGAAGAGGCGATGGATGTTGATCCACCCAATTCTGCCAATAACGGCCAAAGTAAAGAACTACTGGAAACTAGCATAGGTAAGGTAAAGGTGTCTGTTTACAAGGGAGATCTTACCAGTGAAGAGGTTGATGTCATTGTGAACGCCGCCAACGATCGCCTTCAACACTTGGGAGGTGTAGCCAAGGCCATACTTGACAGTGGAGGAAAAGTCATTGAGAAAGAGTCTAACAAGATTATAAAGCAACGAGGATCACTGAAAGACGGTGAAGCTGTCGCAACTAATGCTGGAAGGCTGCCTTGCAAGAAGGTTGTGCACGCTGTGGGTCCCGAATATCGAAAAGTAGGATTGTCCCAGAGCAGGCTCCTCCTTCGCCAAACCTGTTTAAACAGTTTTAAAATTGCACAGGAATTGAAAATGACCTCCATAGCATTGCCAGCCATTAGCTCCGGTATTTATGGCATGCCAAAAGATGCGTGTGCTGAAGTGATGTTTGATGCCGTTGAGGAGTTTGCTAGACAAGGCGATTCGAAGAAGAAGACGATCACTGACATTAGATTCGTGAACATAGATGATCCCACAGTGCAAGCATTTAAAAAAGAGTTTGTCTCTAGGTTTGGTGACAACCATGACCATTCTGTAAGTAAAAGCCTGGCTGGAGGACGGGCTATTAAAGTGCCACCAACAGGCGCCGAAGGTGCTAATTCCTCTGCAATGTCGACTTCAAGACGAAATCGCGGTAAAAACAAGAGCATCTCTGACAACAGTCGTACAACAACCACCACGAGTAGCCATCACCACAGTACCAATTCTGCTGCTACAGCCGATCACCCTTTGAGTGGTTTCAGTAATCCGTCGTCTTCAGACACATCATACAGTAGGGCAGTGAAGAAAAGTGCTGGTGATAATAATGCAAGAGAACCCACATCTCAGGAGTCTGGTGGTGCAGGCATAACGGCGCTCCATCTCCCTCCAGGGGGTAAGGAAGCTTCTAGTACTACGGACCGAAAAGAGGAAGATCCCTGTCCTATTTGTCTTGATACTATAACCAGTCCACAAACGTTGAAGTGTAAGCATGCTTTCTGCTCCGGATGCCTTCAAAGAGCCTTAAAAACAAGCAACAAGTGTCCCGTGTGTCAAGAACCTCAAGGTGTTCTTCGAGGAAACCAGCCCCCTGGAGAAATGAGGTCTCGTTTTGAACGTGGTGGTGTTCCAGGTTACGAAGGGTACGGTACAATTGTTATCGACTATCACTTCCCATCTGGAATTCAAGGACGGGAACATCCTAACCCCGGCCAGTGGTTTGGAGGCACGTCCCGAACTGCTTATCTTCCAGATACTCGTGAAGGGAGAGAGGTGTTGCAACTACTACGGAGAGCCTTTGATGCTCGATTGGTGTTTACGATTGGTACTTCAAATACAACAGGACTTTCAAACCAAATAACATGGAATGATATTCATCACAAAACTAGCTGGAGTGGCGGCCCTTATCGATTTGGATATCCTGACCCAGATTACCTACGGCGAGTTAAAGAAGAGTTGGCCGCTAAAGGAATCCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3UIR3	E3 ubiquitin-protein ligase DTX3L OS=Mus musculus OX=10090 GN=Dtx3l PE=1 SV=1
Q8N9I9	Probable E3 ubiquitin-protein ligase DTX3 OS=Homo sapiens OX=9606 GN=DTX3 PE=1 SV=2
Q5REG4	Probable E3 ubiquitin-protein ligase DTX3 OS=Pongo abelii OX=9601 GN=DTX3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000869 (this species only)
Ubiquitin family	E3\|E3 activity RING\|RING · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18102 all species →	DTC	Deltex C-terminal domain	Domain	Interproscan
PF01661 all species →	Macro	Macro domain	Domain	Interproscan
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR039396 all species →	Domain	Deltex, C-terminal	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR039399 all species →	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR039398 all species →	Family	Deltex family	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622 all species →	DELTEX-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.7215.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.