Genomic Location: Ap4:57672230...57676100
NR annotation: XP_020631316.1, NAD-dependent deacetylase sir2A-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap4.7284 |
| Transcript |
| evm.model.Ap4.7284 |
| Protein |
| evm.model.Ap4.7284 |
| UniProt accession | Description |
|---|---|
| Q9FE17 | NAD-dependent protein deacetylase SRT1 OS=Arabidopsis thaliana OX=3702 GN=SRT1 PE=1 SV=1 |
| Q7XWV4 | NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRT1 PE=1 SV=2 |
| B8ARK7 | NAD-dependent protein deacetylase SRT1 OS=Oryza sativa subsp. indica OX=39946 GN=SRT1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000904 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF08603 all species → | CAP_C | Adenylate cyclase associated (CAP) C terminal | Family | Interproscan |
| PF02146 all species → | SIR2 | Sir2 family | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR050134 all species → | Family | NAD-dependent sirtuin protein deacylases | Interproscan |
| IPR029035 all species → | Homologous_superfamily | DHS-like NAD/FAD-binding domain superfamily | Interproscan |
| IPR013912 all species → | Domain | Adenylate cyclase-associated CAP, C-terminal | Interproscan |
| IPR003000 all species → | Family | Sirtuin family | Interproscan |
| IPR016098 all species → | Homologous_superfamily | Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal | Interproscan |
| IPR026590 all species → | Domain | Sirtuin family, catalytic core domain | Interproscan |
| IPR036223 all species → | Homologous_superfamily | Adenylate cyclase-associated CAP, C-terminal superfamily | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11085 all species → | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000122 all species → | Biological Process | negative regulation of transcription by RNA polymerase II | Interproscan |
| GO:0003714 all species → | Molecular Function | transcription corepressor activity | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0003779 all species → | Molecular Function | actin binding | Interproscan |
| GO:0007010 all species → | Biological Process | cytoskeleton organization | Interproscan |
| GO:0070403 all species → | Molecular Function | NAD+ binding | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K11416 | SIRT6, SIR2L6; NAD-dependent protein deacetylase sirtuin 6 | EC:2.3.1.286 | Chromosome and associated proteins | ko03036 | deepkoala |
Transcript abundance of evm.model.Ap4.7284 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
