Gene detail

Detailed information of evm.model.Ap4.7328 in Astrangia poculata

Genomic Location: Ap4:58055804...58104792
NR annotation: XP_020614850.1, xaa-Pro dipeptidase-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.7328

atgagtgcagccacggttccgtcgtgttttcaccttggaacacacacactctctgtaccagtcagtcttcatgccagcaatagaaagcggttgtgtgagcgtctaaagaaggccaaaggtgtacagtcaggagcaatagttttgctacaaggaggggagcaaaagcaacgagactgcacagatgctgatgtggttttccggcaggaatcctactttcactggacctttggtgttctggaaggtgattgtttcggtgctgtggaagtggatacagcacgctccatcttgttttttccacggttacctccagagtatgccatctggatgggaaagatccatagccttgagcattttaagaagaagtacgaagttgatgaggtcttctttactgatgagatagccgatgtactgcagaagaaatcaccatccaccttactgacactgcgaggtctcaacactgattcggggcactattgcagagaagcagcatttgatggcataagcaagtttaacgtagacaacaaaatcttacatcctgagatagctgaatgccgtgtgttcaagacacctcaggagttagaggtgatgcgctttgcaaacagagtcagcagtgaagctcacaaagaggtaatgaaacgtgttagacctggaatgactgagtttgaattggaaagcttattccagcactactgttactctcaaggtggctgtcgacatgtggcatatacctgtattggagcaagcggccacaactgtgctacccttcattatggccatgctggggcaccaaatgacaaggtcatccgtgatggagatatgtgcttgtttgacatgggtggagaatactactgctatgcatcagacatcacatgttcatttccagccaatggcaagttcacagaggatcagcgcaagatttacgaagccgtgtacaaagccagtcgtgcagtaatggcggctgttaagccaggtgtaaaatgggccgatatgcatcgtttggcagaccgtgttcaactggagtgtcttagagacgtggggctcttacagggggacgtaaatgaaatgatgaagctgcaccttggggccgttttcatgcctcatggtcttggacatttgatgggacttgatgttcatgacgttggtggataccctgagggtactcagcggataaatgaaccaggcctccgctcgctcagaactacccgtgtgctagaagaaagcatggtactgaccattgagccagggatctattttatcgatgctacactaaaccctgctttggaaaatcctgaaacagcgcggttctttaatcaagaaatgctgcagcgattccgaaattttggaggggttcgtatcgaagatgatatcgtggtgacgtcagacggtatggaactgatgacgtgtgtcccacgcaccgtgcatgaaatcgagactctgatggctgaaggagcaaatctcccgccccagttccccactaccgtttcttcacaaggaacgaaagaacgagagggactggggcgaccattcgacttcggtcctcttcgccttctccattttgcacagattttgatggctgctcctgaaacaaagtcattttaccaacttggtgccaactctttggctgttcctgtgagcctccatgccaccaaccgaagaaggatttgtgagcgactcagaaacaataaagctgttccaaaaggaggtatagttttacttcaagggggagaacaacaacaaagatattgcactgatggagatgttgtatttcgacaggagtcttttttccattggacatttggtgtattagaagctggctgctttggtgcagttgaagtggacactgcccatgctattctgttctttcccagaccccctcctggatatcctgtctggatgggcaagaaatacagtttggagtacttcaggaagcgttatgaagtagaggaagtccactacacaaaccagattgctgatgtgttgagtgagaaaaatccatctgttcttctcacattacaaggcacaaacactgattcaaagcacatgtgcaaagaagctacatttgaaaacatagacaaattctatgtggacaacgttattttacatcctgagatttcagaatgccgggtgttcaagactagtcaggaattggaagtgatgcggtatgtcaacaaaatcagtagccagggtcataaggaggtaatgaagcaggtcagaccagggatgtcaacatttcaggtggagagcctattccaacaccactgtttttatcatggaggatgccgtcatttggcgtacaactgtttagttgcaagtggccaagattgtgcttgtccctctcatacagttgaagtagacaacaaagttatcagtgatggagacatgtgcttatttgacatgggttgtgagtattactgctatgcgtcagacatcacatgttcatttccagccagtggcaagttcacagaggatcagcgcaagatttatgaaatctgcctcaaggctaacagagctgttatgatggcggttaagccaggtgttatgtgggctgatatgcaccgtttggcagatcgtgttcagcttgagggtctcagaaacataggtctattagagggggacattgacgagataatgaccttgcaccttggtgctgtttttatgccatatggtctgggacacctgatgggccttgatgttcatgacgtaggggggtaccccaagggaactgaacggataaacgaaccaggtcttcgctcactcagaactacccgtgtcttggaagagggcatggtactaaccattgaaccaggaattcattttatcccagaagtcatcgaggaggcgttggaaaatcccaatatggcgcacttctttaaccgtgaagtattggctagattttggaattttggaggggtccatatcgaggacgatattgtggtgacgtcaaacggtatggaactcttgacagatgtgcctcgtacagtggatgaaatcgaggctctaatggaacgaggatcaagctaa

Transcript

evm.model.Ap4.7328

ATGAGTGCAGCCACGGTTCCGTCGTGTTTTCACCTTGGAACACACACACTCTCTGTACCAGTCAGTCTTCATGCCAGCAATAGAAAGCGGTTGTGTGAGCGTCTAAAGAAGGCCAAAGGTGTACAGTCAGGAGCAATAGTTTTGCTACAAGGAGGGGAGCAAAAGCAACGAGACTGCACAGATGCTGATGTGGTTTTCCGGCAGGAATCCTACTTTCACTGGACCTTTGGTGTTCTGGAAGGTGATTGTTTCGGTGCTGTGGAAGTGGATACAGCACGCTCCATCTTGTTTTTTCCACGGTTACCTCCAGAGTATGCCATCTGGATGGGAAAGATCCATAGCCTTGAGCATTTTAAGAAGAAGTACGAAGTTGATGAGGTCTTCTTTACTGATGAGATAGCCGATGTACTGCAGAAGAAATCACCATCCACCTTACTGACACTGCGAGGTCTCAACACTGATTCGGGGCACTATTGCAGAGAAGCAGCATTTGATGGCATAAGCAAGTTTAACGTAGACAACAAAATCTTACATCCTGAGATAGCTGAATGCCGTGTGTTCAAGACACCTCAGGAGTTAGAGGTGATGCGCTTTGCAAACAGAGTCAGCAGTGAAGCTCACAAAGAGGTAATGAAACGTGTTAGACCTGGAATGACTGAGTTTGAATTGGAAAGCTTATTCCAGCACTACTGTTACTCTCAAGGTGGCTGTCGACATGTGGCATATACCTGTATTGGAGCAAGCGGCCACAACTGTGCTACCCTTCATTATGGCCATGCTGGGGCACCAAATGACAAGGTCATCCGTGATGGAGATATGTGCTTGTTTGACATGGGTGGAGAATACTACTGCTATGCATCAGACATCACATGTTCATTTCCAGCCAATGGCAAGTTCACAGAGGATCAGCGCAAGATTTACGAAGCCGTGTACAAAGCCAGTCGTGCAGTAATGGCGGCTGTTAAGCCAGGTGTAAAATGGGCCGATATGCATCGTTTGGCAGACCGTGTTCAACTGGAGTGTCTTAGAGACGTGGGGCTCTTACAGGGGGACGTAAATGAAATGATGAAGCTGCACCTTGGGGCCGTTTTCATGCCTCATGGTCTTGGACATTTGATGGGACTTGATGTTCATGACGTTGGTGGATACCCTGAGGGTACTCAGCGGATAAATGAACCAGGCCTCCGCTCGCTCAGAACTACCCGTGTGCTAGAAGAAAGCATGGTACTGACCATTGAGCCAGGGATCTATTTTATCGATGCTACACTAAACCCTGCTTTGGAAAATCCTGAAACAGCGCGGTTCTTTAATCAAGAAATGCTGCAGCGATTCCGAAATTTTGGAGGGGTTCGTATCGAAGATGATATCGTGGTGACGTCAGACGGTATGGAACTGATGACGTGTGTCCCACGCACCGTGCATGAAATCGAGACTCTGATGGCTGAAGGAGCAAATCTCCCGCCCCAGTTCCCCACTACCGTTTCTTCACAAGGAACGAAAGAACGAGAGGGACTGGGGCGACCATTCGACTTCGGTCCTCTTCGCCTTCTCCATTTTGCACAGATTTTGATGGCTGCTCCTGAAACAAAGTCATTTTACCAACTTGGTGCCAACTCTTTGGCTGTTCCTGTGAGCCTCCATGCCACCAACCGAAGAAGGATTTGTGAGCGACTCAGAAACAATAAAGCTGTTCCAAAAGGAGGTATAGTTTTACTTCAAGGGGGAGAACAACAACAAAGATATTGCACTGATGGAGATGTTGTATTTCGACAGGAGTCTTTTTTCCATTGGACATTTGGTGTATTAGAAGCTGGCTGCTTTGGTGCAGTTGAAGTGGACACTGCCCATGCTATTCTGTTCTTTCCCAGACCCCCTCCTGGATATCCTGTCTGGATGGGCAAGAAATACAGTTTGGAGTACTTCAGGAAGCGTTATGAAGTAGAGGAAGTCCACTACACAAACCAGATTGCTGATGTGTTGAGTGAGAAAAATCCATCTGTTCTTCTCACATTACAAGGCACAAACACTGATTCAAAGCACATGTGCAAAGAAGCTACATTTGAAAACATAGACAAATTCTATGTGGACAACGTTATTTTACATCCTGAGATTTCAGAATGCCGGGTGTTCAAGACTAGTCAGGAATTGGAAGTGATGCGGTATGTCAACAAAATCAGTAGCCAGGGTCATAAGGAGGTAATGAAGCAGGTCAGACCAGGGATGTCAACATTTCAGGTGGAGAGCCTATTCCAACACCACTGTTTTTATCATGGAGGATGCCGTCATTTGGCGTACAACTGTTTAGTTGCAAGTGGCCAAGATTGTGCTTGTCCCTCTCATACAGTTGAAGTAGACAACAAAGTTATCAGTGATGGAGACATGTGCTTATTTGACATGGGTTGTGAGTATTACTGCTATGCGTCAGACATCACATGTTCATTTCCAGCCAGTGGCAAGTTCACAGAGGATCAGCGCAAGATTTATGAAATCTGCCTCAAGGCTAACAGAGCTGTTATGATGGCGGTTAAGCCAGGTGTTATGTGGGCTGATATGCACCGTTTGGCAGATCGTGTTCAGCTTGAGGGTCTCAGAAACATAGGTCTATTAGAGGGGGACATTGACGAGATAATGACCTTGCACCTTGGTGCTGTTTTTATGCCATATGGTCTGGGACACCTGATGGGCCTTGATGTTCATGACGTAGGGGGGTACCCCAAGGGAACTGAACGGATAAACGAACCAGGTCTTCGCTCACTCAGAACTACCCGTGTCTTGGAAGAGGGCATGGTACTAACCATTGAACCAGGAATTCATTTTATCCCAGAAGTCATCGAGGAGGCGTTGGAAAATCCCAATATGGCGCACTTCTTTAACCGTGAAGTATTGGCTAGATTTTGGAATTTTGGAGGGGTCCATATCGAGGACGATATTGTGGTGACGTCAAACGGTATGGAACTCTTGACAGATGTGCCTCGTACAGTGGATGAAATCGAGGCTCTAATGGAACGAGGATCAAGCTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0D7	Xaa-Pro dipeptidase OS=Rattus norvegicus OX=10116 GN=Pepd PE=2 SV=1
Q11136	Xaa-Pro dipeptidase OS=Mus musculus OX=10090 GN=Pepd PE=1 SV=3
P12955	Xaa-Pro dipeptidase OS=Homo sapiens OX=9606 GN=PEPD PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003639 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05195 all species →	AMP_N	Aminopeptidase P, N-terminal domain	Domain	Interproscan
PF00557 all species →	Peptidase_M24	Metallopeptidase family M24	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR052433 all species →	Family	Eukaryotic-type Prolidase	Interproscan
IPR007865 all species →	Domain	Aminopeptidase P, N-terminal	Interproscan
IPR029149 all species →	Homologous_superfamily	Creatinase/Aminopeptidase P/Spt16, N-terminal	Interproscan
IPR036005 all species →	Homologous_superfamily	Creatinase/aminopeptidase-like	Interproscan
IPR000994 all species →	Domain	Peptidase M24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48392 all species →	-	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030145 all species →	Molecular Function	manganese ion binding	Interproscan
GO:0070006 all species →	Molecular Function	metalloaminopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14213	PEPD; Xaa-Pro dipeptidase	EC:3.4.13.9	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.