Gene detail

Detailed information of evm.model.Ap4.763 in Astrangia poculata

Genomic Location: Ap4:8100143...8128070
NR annotation: KAJ7380971.1, DNA-directed RNA polymerase III subunit RPC2 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.763

atggcggcagagatgaacactcaggacaaatggaaactattgccagcctttttaaaggttaagggacttgtcaagcaacacatagattcatttaattacttcataaacgtggatataaagaagattgttaaagcaaatgaaaaaattactactgatgctgatcctgtgtggtatttaaagtacctgaacatctatgtgggtagtcctgatgtggaagagtcattcaatatcacaaaacccatctcacctcacgagtgccgcctgcgagatatgacatactctgcacccatcactgtagatatcgagtacaccagaggaagccagcgagtggtgaggcataacttgccaatagggagaatgccgataatgcttcggagttcaaactgtgtattgacagggaagagtccggcagagttagcttccttgaatgagtgtcctattgatccaggaggttacttcattgcaaatggaacagaaaaggttattttaattcaagaacaactatcgaagaatcgcatcattgtggaagctgacaaaaaaggaaatattggatgttctgtaacaagttcaacggcagaaagaaaaagcagaacaagtattgtgactaaaaaaaacaagtttcttttgaaacataatgctctgtctgaggatgtaccggtggttgtggtattcaaggccatgggcatagagtgtgaacaggaaatagttcaaatggttgggtgcgaggaagaagtcatctccacgtttgcaccatcacttgaagagtgccatagactcaacatctacacacagttacaggccctgcagtatgttgggtccaaagtgcgtcaacgtgctacatggggcaagagtaggaccaaggtggaggaagcaagagagttgttagcaggagtcatgcttgctcatgttccggtaatcaagtatgatttcaaagccaagtgtgtatttttagctctgatgattcggagagtcatacttgcttgcagtgatgaggcccatgtggatgatcgtgattactatggtaacaagcgactggaactagcagggcaggccgaaacgatctatctattcggtgacgacagggttgtattgccagatctagcctgcgttgcaatggtcacgcaggcaatgccagatccagacacaatggttttcactgtgacctttgctatatacgaattcgaagtacaagtgactttgagatcgaaaaggctaatgtggtacagcaatgaggtggatgtatggcttttagagacgcttctatctcttctatttgaggatctgttcaagagatttaatgctgagctcaaaaagattgcagaccaaacgattccaaagccaagagctgcacagtttgacattgtgaagcacatgcgtcaggatcaaataacacatggactggttcatgcaatcacctcgggaaactggataattaagaggtttaacatgcatcgtgctggtgtcacgcaagtactttcacgtctttcatttatttctgctcttggaatgatgacgagaattagcagtcagtttgaaaagacacgtaaagtgagtggtcctcggtcactgcagccgtctcagtggggaatgttgtgtccgtcagacacgcctgaaggagaggcttgtgggttagtgaaaaaccttgcacttatgacacatatcactacagaccaggatgaggaacctattatccgtctggcttataaccttggagtagagaatctaagtatgctctctggagaggaaataagccatccttcagtctatctagtctttctaaatggaaacattcttggtgttgtaaagagttacaagcggttagttgagacgtttcgactgatgagaagagctggctacataagtgagtttgtatccatttgtccaaatcaccaacacagatttgtcaatattgcatctgatggaggacgagtttgcagaccctacattatcgttaaaagtggtaaaccaaaggtggtcgacagacatattcaagaacttgtgcaagggtttaggagttttgaggacttcttacacgaaggcctggttgagtacttggatgtcaatgaagaaaacgactgctccattgccctttatgaaaaagaaatcacaagggagacaacacatctagagatagagccgtttactctgcttggtgtatgtgctgggcttataccataccctcaccacaatcagtcacccaggaacacataccagtgtgctatgggcaaacaggccatgggttccattggctacaaccagcgtaatagaatagacaccttgctgtactttttatgttatcctcaagtgcccttggttaagacgaagactatagatttgatccagtttgacaagctgccggcaggtcaaaatgcaacagtggctgttatgagctacagtggatatgatattgaggatgccctgattctcaacaaagcttctgttgaccgag

Transcript

evm.model.Ap4.763

ATGGCGGCAGAGATGAACACTCAGGACAAATGGAAACTATTGCCAGCCTTTTTAAAGGTTAAGGGACTTGTCAAGCAACACATAGATTCATTTAATTACTTCATAAACGTGGATATAAAGAAGATTGTTAAAGCAAATGAAAAAATTACTACTGATGCTGATCCTGTGTGGTATTTAAAGTACCTGAACATCTATGTGGGTAGTCCTGATGTGGAAGAGTCATTCAATATCACAAAACCCATCTCACCTCACGAGTGCCGCCTGCGAGATATGACATACTCTGCACCCATCACTGTAGATATCGAGTACACCAGAGGAAGCCAGCGAGTGGTGAGGCATAACTTGCCAATAGGGAGAATGCCGATAATGCTTCGGAGTTCAAACTGTGTATTGACAGGGAAGAGTCCGGCAGAGTTAGCTTCCTTGAATGAGTGTCCTATTGATCCAGGAGGTTACTTCATTGCAAATGGAACAGAAAAGGTTATTTTAATTCAAGAACAACTATCGAAGAATCGCATCATTGTGGAAGCTGACAAAAAAGGAAATATTGGATGTTCTGTAACAAGTTCAACGGCAGAAAGAAAAAGCAGAACAAGTATTGTGACTAAAAAAAACAAGTTTCTTTTGAAACATAATGCTCTGTCTGAGGATGTACCGGTGGTTGTGGTATTCAAGGCCATGGGCATAGAGTGTGAACAGGAAATAGTTCAAATGGTTGGGTGCGAGGAAGAAGTCATCTCCACGTTTGCACCATCACTTGAAGAGTGCCATAGACTCAACATCTACACACAGTTACAGGCCCTGCAGTATGTTGGGTCCAAAGTGCGTCAACGTGCTACATGGGGCAAGAGTAGGACCAAGGTGGAGGAAGCAAGAGAGTTGTTAGCAGGAGTCATGCTTGCTCATGTTCCGGTAATCAAGTATGATTTCAAAGCCAAGTGTGTATTTTTAGCTCTGATGATTCGGAGAGTCATACTTGCTTGCAGTGATGAGGCCCATGTGGATGATCGTGATTACTATGGTAACAAGCGACTGGAACTAGCAGGGCAGGCCGAAACGATCTATCTATTCGGTGACGACAGGGTTGTATTGCCAGATCTAGCCTGCGTTGCAATGGTCACGCAGGCAATGCCAGATCCAGACACAATGGTTTTCACTGTGACCTTTGCTATATACGAATTCGAAGTACAAGTGACTTTGAGATCGAAAAGGCTAATGTGGTACAGCAATGAGGTGGATGTATGGCTTTTAGAGACGCTTCTATCTCTTCTATTTGAGGATCTGTTCAAGAGATTTAATGCTGAGCTCAAAAAGATTGCAGACCAAACGATTCCAAAGCCAAGAGCTGCACAGTTTGACATTGTGAAGCACATGCGTCAGGATCAAATAACACATGGACTGGTTCATGCAATCACCTCGGGAAACTGGATAATTAAGAGGTTTAACATGCATCGTGCTGGTGTCACGCAAGTACTTTCACGTCTTTCATTTATTTCTGCTCTTGGAATGATGACGAGAATTAGCAGTCAGTTTGAAAAGACACGTAAAGTGAGTGGTCCTCGGTCACTGCAGCCGTCTCAGTGGGGAATGTTGTGTCCGTCAGACACGCCTGAAGGAGAGGCTTGTGGGTTAGTGAAAAACCTTGCACTTATGACACATATCACTACAGACCAGGATGAGGAACCTATTATCCGTCTGGCTTATAACCTTGGAGTAGAGAATCTAAGTATGCTCTCTGGAGAGGAAATAAGCCATCCTTCAGTCTATCTAGTCTTTCTAAATGGAAACATTCTTGGTGTTGTAAAGAGTTACAAGCGGTTAGTTGAGACGTTTCGACTGATGAGAAGAGCTGGCTACATAAGTGAGTTTGTATCCATTTGTCCAAATCACCAACACAGATTTGTCAATATTGCATCTGATGGAGGACGAGTTTGCAGACCCTACATTATCGTTAAAAGTGGTAAACCAAAGGTGGTCGACAGACATATTCAAGAACTTGTGCAAGGGTTTAGGAGTTTTGAGGACTTCTTACACGAAGGCCTGGTTGAGTACTTGGATGTCAATGAAGAAAACGACTGCTCCATTGCCCTTTATGAAAAAGAAATCACAAGGGAGACAACACATCTAGAGATAGAGCCGTTTACTCTGCTTGGTGTATGTGCTGGGCTTATACCATACCCTCACCACAATCAGTCACCCAGGAACACATACCAGTGTGCTATGGGCAAACAGGCCATGGGTTCCATTGGCTACAACCAGCGTAATAGAATAGACACCTTGCTGTACTTTTTATGTTATCCTCAAGTGCCCTTGGTTAAGACGAAGACTATAGATTTGATCCAGTTTGACAAGCTGCCGGCAGGTCAAAATGCAACAGTGGCTGTTATGAGCTACAGTGGATATGATATTGAGGATGCCCTGATTCTCAACAAAGCTTCTGTTGACCGAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NW08	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens OX=9606 GN=POLR3B PE=1 SV=2
P59470	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus OX=10090 GN=Polr3b PE=1 SV=2
P25167	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster OX=7227 GN=Polr3B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001360 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04563 all species →	RNA_pol_Rpb2_1	RNA polymerase beta subunit	Family	Interproscan
PF04566 all species →	RNA_pol_Rpb2_4	RNA polymerase Rpb2, domain 4	Domain	Interproscan
PF04561 all species →	RNA_pol_Rpb2_2	RNA polymerase Rpb2, domain 2	Domain	Interproscan
PF04567 all species →	RNA_pol_Rpb2_5	RNA polymerase Rpb2, domain 5	Domain	Interproscan
PF00562 all species →	RNA_pol_Rpb2_6	RNA polymerase Rpb2, domain 6	Domain	Interproscan
PF04565 all species →	RNA_pol_Rpb2_3	RNA polymerase Rpb2, domain 3	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007644 all species →	Domain	RNA polymerase, beta subunit, protrusion	Interproscan
IPR015712 all species →	Family	DNA-directed RNA polymerase, subunit 2	Interproscan
IPR037033 all species →	Homologous_superfamily	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily	Interproscan
IPR007646 all species →	Domain	RNA polymerase Rpb2, domain 4	Interproscan
IPR007642 all species →	Domain	RNA polymerase Rpb2, domain 2	Interproscan
IPR007647 all species →	Domain	RNA polymerase Rpb2, domain 5	Interproscan
IPR007120 all species →	Domain	DNA-directed RNA polymerase, subunit 2, hybrid-binding domain	Interproscan
IPR007645 all species →	Domain	RNA polymerase Rpb2, domain 3	Interproscan
IPR037034 all species →	Homologous_superfamily	RNA polymerase Rpb2, domain 2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR20856 all species →	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0003899 all species →	Molecular Function	DNA-directed 5'-3' RNA polymerase activity	Interproscan
GO:0006351 all species →	Biological Process	DNA-templated transcription	Interproscan
GO:0001056 all species →	Molecular Function	RNA polymerase III activity	Interproscan
GO:0005666 all species →	Cellular Component	RNA polymerase III complex	Interproscan
GO:0032549 all species →	Molecular Function	ribonucleoside binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.763.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.