Gene detail

Detailed information of evm.model.Ap4.768 in Astrangia poculata

Genomic Location: Ap4:8164998...8177483
NR annotation: XP_020608771.1, uncharacterized protein LOC110047365 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.768

atggaagatatcagcgacgaagaagtgaaagtattggcttctaattgggtgaaaagaatccaaaactcgattctgaccccaactgatgatgtcagaaattatggtgtcgtcagaacttgtttcggatcaaatgatgatcgaatgcacacgaaccacgaattttgcgaagcaaatgggaagatcgatgactttaatttacatcaaccaagtacagcactaattccagaatccaccaattctctgaactttaaacagttgcctgccaatggaggaggcggtagagatgttgtggagcaatgtgtcacgccgttcgaacgcgagtccaaacaatcgaacagcgcgcactcgtccaaatcgaatggcgaacgagacgaaattttaacaagagaagcaagctctaacagcactccaagagtagatgttgcctcgttacggcagaagcgattggcttttttcgatagcaagctgagatcacaaggagaagaagatttattacgcgataaaaatcgcaacattttgacgaacatcgccgcgaggcattcgcctccaagcgaagcacgtagctcttcgcagtttgattcgttcccattaaggaggaacggcttcgcgacattggaaccatcagacgaaatgtatcgcttgcaatcttcaggaacacctctctcgtctccatttaacagtggtagtccccgtaacaacagcatgaggcattactacaagtctcctcggtcatctgaactcgatgaagaagacatcaaacttgagctctggggtctaaaagaagcagtgcagtctggagaagtcgatttaaatgattatcttaagaaaccagcgtggaaaaatcgtagcttttcaaactctgaagcttcacaccaacttggacagaattgtgatctgcaatcttctgagaaacttccaagaaatccatttgatcctttacatgagaaaactaaaccaatcattatacctgacagtggaggctatcatcattcttattttaactctgttggtaaacaaggcaaaaaaatgtggaaagaaattgatgatgttgacgatgggtgtttttcaaagaaattccacagaacttcttgtacacctgtggttcaagcaggaggagcttcaaattcctttaatggccctgaaccccagataaatggtccactttattcaggctttgaaacatctgattctgagagcagtttgttgagttttggttccaagtgcgatgatgttcattaccggaaagttgtcaaaaaacaggattctcctgttattgacaaaaggggaagtcagagaaccaatggtcattctaccagcaaaaagcaagaaaataaaatcaaaccaaagagaagcaaagatcaaattcgtatggaacttactgagtttatagaaggctctggaactccaaaagacacgaagcattctaagcaaaacaacagcagtaatgagcaacatttaaaaagctctggtgatattgcaaaaattatcaatgcagacagcttattgtctacagtcccacaaggtcacttgcaaaatggttttgtagaaagagcagatgtagtgaatttaaatgaagatccatcttgcaaaaccggtatttgtgagagggatgttgcattgtcaagtgaagactacaatcagacaagcaacactatggtacctgctgagaatcaagtgtcaagtgttatgggaaaaatttgcccaaagtgcagcgaagtcaatagcagggctgccaattggtgtattgagtgtgggacagcacttgtttgcgtcaaggcatcttgcttgacaactcaccagcaaaagaactttgagaaacagtgcctagagacacaggccttaatcaaggagacattacagacacccatgaatttatcacagcttttgtcatatgataaagctgccagagaagaaaagtcactgagtgatgacatttcaaatctttctttacaagtctcacacagtactagtaatttagaggagacaaagtactcgtcaagtccccgtggctacaaacggcgttggatgcgctccagcattgcgtggagtacctataactctagcgaactctcaaaaagcccttcttttgtcagagagcaaggtaaaatgaaagaaaagaaaagagcaacttcattctcagatttgacttgttcctcaaatgagaaaggaagtaaacataaaagaaacagtcgaaacaaatctgcaagacaaagaacggtcagctgtagctcatttgcaggcccagatgatgaagtagcaaattcttgtgaaagattagcaaactcaaaaggctacagaagccttcagactacttcactgaaaggcatgcagaaagaaaagccaaatgggatgtgtgttcagagggcaagacctttcgttgagaatcggaatgaaagaacaagtgaaggaccatacagtgcttatccaggagatggcatgattgttatggaaagtcagtcatgtcctgccctgcttaagagctctagtggatcatctttggatggggggacaaggtcttccatgtcacaagttgcaaggacaattgtaccacctttgaaccttcaagatgtaggcagttatgacaggattctgactctgattcgctctcagcgagacagtgatccagtgccatacctttaccttcctgatgagatactgctgctgatcttttcctttttaccacacaaagacttggtgtcttgttcacgggtctgctggcagttttatcgaatctctatggatgaatctttgtggaaagtcattgtgttgggacagaaccccaatataactgatgaatggttgcatgcaattggcacccggcgaccaatgagtttgaccatttctaaatgtcgcggtgacaaaattacagccaaaggacttcgagaattgttccggaattgtagtgattccttggaggagctgaatttcagtcgttgccgtggaggcgagttgattggtgagtctgttcttctacatgtcgcagcaagatgtcattggttgaagtctgttgatgcaagctggactaatgtcagtgataatggggtccaagctctcgttgacaacgtgaaaaggttggagtgtctttgtttgaatggctgttcagctgtcagtgaccagtccatcaagtgtgtggcaagcggacatggtcaaaccttgagaatctttgaagtgtttggttgctttaacatcacaccagcggggatgaaaattcttggtcagacttgcaaacagttgcaaactttaaacattggacaatgttataagatcactgacacggctatcggttgtttggtgtctaatcttccagaactggagaaccttgatctccgaggttgtaagcaggttcgtgattcagctgtgaagaagattgttcgtcactgtccacttatcactactcttgcactagctaactgtcctcttatcactgacgtgtctttagcagagattgccaccaatcttccgagaataaggtctctggatatctgcggttgttctaaagtgactgacaatggtatctgtgcactgtccagaaactgtcatagacttgagttgttggacttgacttctactggagttggccacaagagcgtcttgtcgctcgccaactattgcagtcagagtttgtgtaatttgaagctgagtttctgcacagacatttattataacactgtggttcatcttgctaaacagtgtaaaagattaaccacacttcacttgtatggctgcaagcgaatacgtaacgcatctaatctcaaattactcaaccctgctcttactattgagtgctga

Transcript

evm.model.Ap4.768

ATGGAAGATATCAGCGACGAAGAAGTGAAAGTATTGGCTTCTAATTGGGTGAAAAGAATCCAAAACTCGATTCTGACCCCAACTGATGATGTCAGAAATTATGGTGTCGTCAGAACTTGTTTCGGATCAAATGATGATCGAATGCACACGAACCACGAATTTTGCGAAGCAAATGGGAAGATCGATGACTTTAATTTACATCAACCAAGTACAGCACTAATTCCAGAATCCACCAATTCTCTGAACTTTAAACAGTTGCCTGCCAATGGAGGAGGCGGTAGAGATGTTGTGGAGCAATGTGTCACGCCGTTCGAACGCGAGTCCAAACAATCGAACAGCGCGCACTCGTCCAAATCGAATGGCGAACGAGACGAAATTTTAACAAGAGAAGCAAGCTCTAACAGCACTCCAAGAGTAGATGTTGCCTCGTTACGGCAGAAGCGATTGGCTTTTTTCGATAGCAAGCTGAGATCACAAGGAGAAGAAGATTTATTACGCGATAAAAATCGCAACATTTTGACGAACATCGCCGCGAGGCATTCGCCTCCAAGCGAAGCACGTAGCTCTTCGCAGTTTGATTCGTTCCCATTAAGGAGGAACGGCTTCGCGACATTGGAACCATCAGACGAAATGTATCGCTTGCAATCTTCAGGAACACCTCTCTCGTCTCCATTTAACAGTGGTAGTCCCCGTAACAACAGCATGAGGCATTACTACAAGTCTCCTCGGTCATCTGAACTCGATGAAGAAGACATCAAACTTGAGCTCTGGGGTCTAAAAGAAGCAGTGCAGTCTGGAGAAGTCGATTTAAATGATTATCTTAAGAAACCAGCGTGGAAAAATCGTAGCTTTTCAAACTCTGAAGCTTCACACCAACTTGGACAGAATTGTGATCTGCAATCTTCTGAGAAACTTCCAAGAAATCCATTTGATCCTTTACATGAGAAAACTAAACCAATCATTATACCTGACAGTGGAGGCTATCATCATTCTTATTTTAACTCTGTTGGTAAACAAGGCAAAAAAATGTGGAAAGAAATTGATGATGTTGACGATGGGTGTTTTTCAAAGAAATTCCACAGAACTTCTTGTACACCTGTGGTTCAAGCAGGAGGAGCTTCAAATTCCTTTAATGGCCCTGAACCCCAGATAAATGGTCCACTTTATTCAGGCTTTGAAACATCTGATTCTGAGAGCAGTTTGTTGAGTTTTGGTTCCAAGTGCGATGATGTTCATTACCGGAAAGTTGTCAAAAAACAGGATTCTCCTGTTATTGACAAAAGGGGAAGTCAGAGAACCAATGGTCATTCTACCAGCAAAAAGCAAGAAAATAAAATCAAACCAAAGAGAAGCAAAGATCAAATTCGTATGGAACTTACTGAGTTTATAGAAGGCTCTGGAACTCCAAAAGACACGAAGCATTCTAAGCAAAACAACAGCAGTAATGAGCAACATTTAAAAAGCTCTGGTGATATTGCAAAAATTATCAATGCAGACAGCTTATTGTCTACAGTCCCACAAGGTCACTTGCAAAATGGTTTTGTAGAAAGAGCAGATGTAGTGAATTTAAATGAAGATCCATCTTGCAAAACCGGTATTTGTGAGAGGGATGTTGCATTGTCAAGTGAAGACTACAATCAGACAAGCAACACTATGGTACCTGCTGAGAATCAAGTGTCAAGTGTTATGGGAAAAATTTGCCCAAAGTGCAGCGAAGTCAATAGCAGGGCTGCCAATTGGTGTATTGAGTGTGGGACAGCACTTGTTTGCGTCAAGGCATCTTGCTTGACAACTCACCAGCAAAAGAACTTTGAGAAACAGTGCCTAGAGACACAGGCCTTAATCAAGGAGACATTACAGACACCCATGAATTTATCACAGCTTTTGTCATATGATAAAGCTGCCAGAGAAGAAAAGTCACTGAGTGATGACATTTCAAATCTTTCTTTACAAGTCTCACACAGTACTAGTAATTTAGAGGAGACAAAGTACTCGTCAAGTCCCCGTGGCTACAAACGGCGTTGGATGCGCTCCAGCATTGCGTGGAGTACCTATAACTCTAGCGAACTCTCAAAAAGCCCTTCTTTTGTCAGAGAGCAAGGTAAAATGAAAGAAAAGAAAAGAGCAACTTCATTCTCAGATTTGACTTGTTCCTCAAATGAGAAAGGAAGTAAACATAAAAGAAACAGTCGAAACAAATCTGCAAGACAAAGAACGGTCAGCTGTAGCTCATTTGCAGGCCCAGATGATGAAGTAGCAAATTCTTGTGAAAGATTAGCAAACTCAAAAGGCTACAGAAGCCTTCAGACTACTTCACTGAAAGGCATGCAGAAAGAAAAGCCAAATGGGATGTGTGTTCAGAGGGCAAGACCTTTCGTTGAGAATCGGAATGAAAGAACAAGTGAAGGACCATACAGTGCTTATCCAGGAGATGGCATGATTGTTATGGAAAGTCAGTCATGTCCTGCCCTGCTTAAGAGCTCTAGTGGATCATCTTTGGATGGGGGGACAAGGTCTTCCATGTCACAAGTTGCAAGGACAATTGTACCACCTTTGAACCTTCAAGATGTAGGCAGTTATGACAGGATTCTGACTCTGATTCGCTCTCAGCGAGACAGTGATCCAGTGCCATACCTTTACCTTCCTGATGAGATACTGCTGCTGATCTTTTCCTTTTTACCACACAAAGACTTGGTGTCTTGTTCACGGGTCTGCTGGCAGTTTTATCGAATCTCTATGGATGAATCTTTGTGGAAAGTCATTGTGTTGGGACAGAACCCCAATATAACTGATGAATGGTTGCATGCAATTGGCACCCGGCGACCAATGAGTTTGACCATTTCTAAATGTCGCGGTGACAAAATTACAGCCAAAGGACTTCGAGAATTGTTCCGGAATTGTAGTGATTCCTTGGAGGAGCTGAATTTCAGTCGTTGCCGTGGAGGCGAGTTGATTGGTGAGTCTGTTCTTCTACATGTCGCAGCAAGATGTCATTGGTTGAAGTCTGTTGATGCAAGCTGGACTAATGTCAGTGATAATGGGGTCCAAGCTCTCGTTGACAACGTGAAAAGGTTGGAGTGTCTTTGTTTGAATGGCTGTTCAGCTGTCAGTGACCAGTCCATCAAGTGTGTGGCAAGCGGACATGGTCAAACCTTGAGAATCTTTGAAGTGTTTGGTTGCTTTAACATCACACCAGCGGGGATGAAAATTCTTGGTCAGACTTGCAAACAGTTGCAAACTTTAAACATTGGACAATGTTATAAGATCACTGACACGGCTATCGGTTGTTTGGTGTCTAATCTTCCAGAACTGGAGAACCTTGATCTCCGAGGTTGTAAGCAGGTTCGTGATTCAGCTGTGAAGAAGATTGTTCGTCACTGTCCACTTATCACTACTCTTGCACTAGCTAACTGTCCTCTTATCACTGACGTGTCTTTAGCAGAGATTGCCACCAATCTTCCGAGAATAAGGTCTCTGGATATCTGCGGTTGTTCTAAAGTGACTGACAATGGTATCTGTGCACTGTCCAGAAACTGTCATAGACTTGAGTTGTTGGACTTGACTTCTACTGGAGTTGGCCACAAGAGCGTCTTGTCGCTCGCCAACTATTGCAGTCAGAGTTTGTGTAATTTGAAGCTGAGTTTCTGCACAGACATTTATTATAACACTGTGGTTCATCTTGCTAAACAGTGTAAAAGATTAACCACACTTCACTTGTATGGCTGCAAGCGAATACGTAACGCATCTAATCTCAAATTACTCAACCCTGCTCTTACTATTGAGTGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q640I9	Lysine-specific demethylase 2B OS=Xenopus laevis OX=8355 GN=kdm2b PE=2 SV=1
Q6P1G2	Lysine-specific demethylase 2B OS=Mus musculus OX=10090 GN=Kdm2b PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005825 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR050648 all species →	Family	F-box/Leucine-rich repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13382 all species →	MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.768.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.