Gene detail

Detailed information of evm.model.Ap4.864 in Astrangia poculata

Genomic Location: Ap4:9059526...9087005
NR annotation: CAH3045108.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.864

atggagaaggagagggagataaatgaaattgtaaattatgttttcacaggaaatatggctaccagttctgaaggagaaatggctattccactttgtcttccaaataactacgaatgggattcgaagaaaagggcatgcaccaaaaagggagaagagcgttcttctctgtatgtagttcaggaagcactacaagaactacgaaagatcaatggcccagtgtgtgtagtgtctgttgctggtacataccggaaaggaaagtcttacgtattaagtagagcttttgaccaaccacccgtttttcctcttggacatgaaatgctacctgagacagtgggtatctggatgtggattttgcctgaaaaacataaggattccagtggccaaactttttcagttgtactactggacactgaaggaattgactccgcaatgggcgaaggtctcgatgacaaccaaatctttactctaaccgtattgctttcatcggtgctaattttcaattctcaaggtgttccaacaagacgagacatcgaagatttggacttgatcgtaaagctgtctcaaagaatacacataagatcaaaccctggagcaaacgctgaatttggagacggagatattttcgacaaaatattccctttctttatatggctgctgagggatgtgacacaagctctaccgagtgactgcgaggacataaaggattactttttaaaaaaggtttttataaaagaaaagaagtctgatcaaggcaagaaagttgttggtagcatcctaagcttctttcctggtttcgatgccttcgctttacctccaccgacagataatgctgacgtgttgagaagtatcagcgaaagtcaaagtcagttgaaccttccgtttcgaaatggcttagagcagtttaagatgttactgaagaactacctttatccaaaaaaaagcttcaatgtcgatgactttgttagtggaaaaggcctagcgctgttggttgagttatacattaaggccattaatactcctggcgccattccaaacgtccaggatgcctggaatgtcattgtggagacacagtgttctgacgccaaaaaagccgcattgatgacatataacaacatcatggaatcacacttgagtggtaaactgccttgcgacagtggggaaatacggaagggtcacaatgctgcttttaaaaagtgcgaaaatgatttaatggcggaaactgcaggattgtcaaccaacacagttgaagactgtttgattcaacttcaggcatcgatagacgatacgttaaagtcgtggcaagtaaagaatgcgaaatccacgagggaattctgcaacgatctcattgagcagctaaagaaacgacatttggttccagtacttcagcaactgaaaggaaacgaggcagttatgttatcttttcgggacatcactgatgcatatgatcaacttagggagaacttcaaaaggcttgcaattggtgccaaagatgttattgccgaagtgttctttaaacttaacctgaaattaaacgaggaaatagaccagtactcgacacaactaaaaaggctgaaagactatgatgagaggttggcccaagaaagggcagctagggcgtttcaagaacaggaaaggacaaggcttgaggaacagctgtcaaaccagattcaggaaattgagaattataggaatcagatggaacatttgatcaataaacaaagcgaggaaaatgcaagatttcgtcgggagatggagaagagagatgaagaacatcgacaacaaatgaaaaacatggaagatgcgaatgaaaagacactcagggatcagaaaaaagaaaactatgagaataatcagaagttaaatcgcgagatgttgagttggaaggaggaaaaccagagtaacttaaaggagatacaaagactgaatgaaaagatggaacatcaaaacgaggaaagtgcagcaagatttcgtcgggagatggagaagagagatgaagaaaatcgacaacaaatgaaaaacatggaagatgcgaatgagaagaaactcagggatcagaagaaagcttcatttgagaatacaagtacaccacgcaacaggcaagcttcattcgaaagtacgaatacaccattcaaaacgcctgaaactactccaagcagaatgtatactccatctgatagtgcaaaaacagtaagcacagcagaaggtggaagaattaaacggcgcacagcagcagcgacaagccgggcaacagagactgcagcgactaaagcgaaattaaatgccgtccaacagcccagtttccgtgatgcagtactcgatacaatctcgtgtggtgcggctgcgatcggtacagttgtatctgcagctgtacctgccttggcaccaattgctgcaccagtggctgctgttgttagtgctggtgctcaagcaattaaaaactgcaatataatgtga

Transcript

evm.model.Ap4.864

ATGGAGAAGGAGAGGGAGATAAATGAAATTGTAAATTATGTTTTCACAGGAAATATGGCTACCAGTTCTGAAGGAGAAATGGCTATTCCACTTTGTCTTCCAAATAACTACGAATGGGATTCGAAGAAAAGGGCATGCACCAAAAAGGGAGAAGAGCGTTCTTCTCTGTATGTAGTTCAGGAAGCACTACAAGAACTACGAAAGATCAATGGCCCAGTGTGTGTAGTGTCTGTTGCTGGTACATACCGGAAAGGAAAGTCTTACGTATTAAGTAGAGCTTTTGACCAACCACCCGTTTTTCCTCTTGGACATGAAATGCTACCTGAGACAGTGGGTATCTGGATGTGGATTTTGCCTGAAAAACATAAGGATTCCAGTGGCCAAACTTTTTCAGTTGTACTACTGGACACTGAAGGAATTGACTCCGCAATGGGCGAAGGTCTCGATGACAACCAAATCTTTACTCTAACCGTATTGCTTTCATCGGTGCTAATTTTCAATTCTCAAGGTGTTCCAACAAGACGAGACATCGAAGATTTGGACTTGATCGTAAAGCTGTCTCAAAGAATACACATAAGATCAAACCCTGGAGCAAACGCTGAATTTGGAGACGGAGATATTTTCGACAAAATATTCCCTTTCTTTATATGGCTGCTGAGGGATGTGACACAAGCTCTACCGAGTGACTGCGAGGACATAAAGGATTACTTTTTAAAAAAGGTTTTTATAAAAGAAAAGAAGTCTGATCAAGGCAAGAAAGTTGTTGGTAGCATCCTAAGCTTCTTTCCTGGTTTCGATGCCTTCGCTTTACCTCCACCGACAGATAATGCTGACGTGTTGAGAAGTATCAGCGAAAGTCAAAGTCAGTTGAACCTTCCGTTTCGAAATGGCTTAGAGCAGTTTAAGATGTTACTGAAGAACTACCTTTATCCAAAAAAAAGCTTCAATGTCGATGACTTTGTTAGTGGAAAAGGCCTAGCGCTGTTGGTTGAGTTATACATTAAGGCCATTAATACTCCTGGCGCCATTCCAAACGTCCAGGATGCCTGGAATGTCATTGTGGAGACACAGTGTTCTGACGCCAAAAAAGCCGCATTGATGACATATAACAACATCATGGAATCACACTTGAGTGGTAAACTGCCTTGCGACAGTGGGGAAATACGGAAGGGTCACAATGCTGCTTTTAAAAAGTGCGAAAATGATTTAATGGCGGAAACTGCAGGATTGTCAACCAACACAGTTGAAGACTGTTTGATTCAACTTCAGGCATCGATAGACGATACGTTAAAGTCGTGGCAAGTAAAGAATGCGAAATCCACGAGGGAATTCTGCAACGATCTCATTGAGCAGCTAAAGAAACGACATTTGGTTCCAGTACTTCAGCAACTGAAAGGAAACGAGGCAGTTATGTTATCTTTTCGGGACATCACTGATGCATATGATCAACTTAGGGAGAACTTCAAAAGGCTTGCAATTGGTGCCAAAGATGTTATTGCCGAAGTGTTCTTTAAACTTAACCTGAAATTAAACGAGGAAATAGACCAGTACTCGACACAACTAAAAAGGCTGAAAGACTATGATGAGAGGTTGGCCCAAGAAAGGGCAGCTAGGGCGTTTCAAGAACAGGAAAGGACAAGGCTTGAGGAACAGCTGTCAAACCAGATTCAGGAAATTGAGAATTATAGGAATCAGATGGAACATTTGATCAATAAACAAAGCGAGGAAAATGCAAGATTTCGTCGGGAGATGGAGAAGAGAGATGAAGAACATCGACAACAAATGAAAAACATGGAAGATGCGAATGAAAAGACACTCAGGGATCAGAAAAAAGAAAACTATGAGAATAATCAGAAGTTAAATCGCGAGATGTTGAGTTGGAAGGAGGAAAACCAGAGTAACTTAAAGGAGATACAAAGACTGAATGAAAAGATGGAACATCAAAACGAGGAAAGTGCAGCAAGATTTCGTCGGGAGATGGAGAAGAGAGATGAAGAAAATCGACAACAAATGAAAAACATGGAAGATGCGAATGAGAAGAAACTCAGGGATCAGAAGAAAGCTTCATTTGAGAATACAAGTACACCACGCAACAGGCAAGCTTCATTCGAAAGTACGAATACACCATTCAAAACGCCTGAAACTACTCCAAGCAGAATGTATACTCCATCTGATAGTGCAAAAACAGTAAGCACAGCAGAAGGTGGAAGAATTAAACGGCGCACAGCAGCAGCGACAAGCCGGGCAACAGAGACTGCAGCGACTAAAGCGAAATTAAATGCCGTCCAACAGCCCAGTTTCCGTGATGCAGTACTCGATACAATCTCGTGTGGTGCGGCTGCGATCGGTACAGTTGTATCTGCAGCTGTACCTGCCTTGGCACCAATTGCTGCACCAGTGGCTGCTGTTGTTAGTGCTGGTGCTCAAGCAATTAAAAACTGCAATATAATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q1MT80	Guanylate-binding protein 4 OS=Danio rerio OX=7955 GN=gbp4 PE=1 SV=1
Q9H0R5	Guanylate-binding protein 3 OS=Homo sapiens OX=9606 GN=GBP3 PE=1 SV=3
Q91YH5	Atlastin-3 OS=Mus musculus OX=10090 GN=Atl3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000346 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02841 all species →	GBP_C	Guanylate-binding protein, C-terminal domain	Domain	Interproscan
PF02263 all species →	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003191 all species →	Domain	Guanylate-binding protein/Atlastin, C-terminal	Interproscan
IPR015894 all species →	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036543 all species →	Homologous_superfamily	Guanylate-binding protein, C-terminal domain superfamily	Interproscan
IPR030386 all species →	Domain	GB1/RHD3-type guanine nucleotide-binding (G) domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10751 all species →	GUANYLATE BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20899	GBP1_3_4_7; guanylate-binding protein 1/3/4/7	-	NOD-like receptor signaling pathway	ko04621	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.