Gene detail

Detailed information of evm.model.Ap4.972 in Astrangia poculata

Genomic Location: Ap4:10198390...10210754
NR annotation: CAH3174456.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.972

atgattaatgagaatgccaaaattttagtgttcttgcgtgaaacgagatggccatggacaccacaacctgttccatttaaacctaacttccctcggttgtcatcgcctcatgcatcaataaaaccactatatgacgtggtggttgttggctccggttatggtggatcgattgctgccagccgctgcgctagagcaggtcagtccgtgtgtgttttggagcgcggaaaggagtggttacctggcgatttccctgagacgttcctgaatgcctggaaagaagtgcaaatccatgctggtggaaagaaagacaagattgaattgaagacatttgaaatcacaatggagcttattgagtatgactttgcaggcaaaccgtctaatctttacgagttctacgtgactgatgacttgagcgtggtccaggggtgcggacttggaggaggttctctcatcaacgcaaatgttggccttgacgccgagcccaccgtatttaagcacacgttgtggccagtggaacttaagcgcgacttgaccaacttgatgtctgtcgatcgaaagcacgtggtagaaatgttgaagccgaccccatatccggataactaccctgaattacataaaatgaaacgtatgaaggatggtctgcaagaatttgacatagaggatattgatcggatgttctataaaactccactgtatgtcacattcgaggacacaccgtccaatcatgttggagtgccacagccaaaatgtaccgcctgtggaaactgctgcggtggatgtaacgttggtgctaaaaacacgctgaacctaaattacttgcctgatgcaaaagcacacggggcagaaatcttcactgaggtagaagtcatatctgtgactaaggcatctgacttaaaagactggatcgtcaaatacaagcgccttgttccagggagtttccaagttgaggaagaatccattcgagccactcacgtcattcttggtgcaggcgcgcttggctccaccaaactgctccttcgctcaaaagaacgcgggctcgacatttctgatcagataggtaagcgtttttcgacgaacggagacgttctggccttcagctacaacggatctgagaagacaaactcggtgggactggaaaccaaacatatgacggaagacagcaaggcgacaccacctggtccctgtatcacatcagttgcggatttccgaaaatcaggagatgaaaacgtaaaaagtcatttcgtcattgaggatggaactccaccatcggctatttctggtctctactcagttggcttgatggctgctgcaaaagtggttggagtcgaaaagttcgacacagacgcagcgatagaaacggcttggagggaattaaaaggtcaagggatagacaattcactgtccttcctctgtatgagtcacgacaatgcaagtggcatcatttcttacgacaaaaacatcgacagtgttgacattaaatgggacagggttggattcgaaagcaactttaaaattgtcaatgaggcattggaaaaggtggcgaaaggacttaaagggacattcgtgaaaaatccaatgtggtcaagtgctcttggtaaaagcgttatctcagctcaccccctcggaggctgccccatgggagagtcaggacaaacagctgtggtcaatcacgctggacaagtattcgaaggtgtgtccgaccgggtattagatggactttatgtagtagacggtgcgatccttccagtagccgtaggcgtcaacccaactcttacgatctcttgccttgcggagcgatgcatgcgacttcttgcgaaaagggaaggatggacaatagactacgacacattcaaaccacttgacaaaactgactttgttcaagcaaagcctggaattcgcttcaccgagaagatggtgggaaaatttacaccgtcaaacggcgaaacggaagtaccttgtgaatttacacttactatcgaatctgatgatgttgagcgcatgatcaaatgtgatccggatcatgctgcaaagattagcggcacggtgacttgtctcgcgttgtcctcatcctctatgtcggtttcggaaggtcattttcaacttttcagctcaagtactgaacacgtagacacgaaggaaatggtttacaaaatggttctcactggagatcgtggcagacagtatttcttcgaaggtgtcaagtacgtacacaaggaccactttggagaaacaggattgaaagacaccacgactttgtttgtcaaagtttacccacgtgatgaaaatgggagagagcctatgggtaaagcaacactctacattacattgcccaactttgccaagcagctagccaccatggaaataaccaataccaacagtacacgcgagaagctccactggatgtcccagtttggtggtttctttaccaaaactctctggaatgtttatggtcccacttcttcaagcaacaaatacttcaatccagatgcaccacctaggaagaaaaggcctctaagattgaatggcggcaccccagaaatatacaactgcatcactaaggacaagtttgagatagtcttgacccgttatgaaggtggaacaaaaggtcctgttgttatgtttcacggtgcaggagtgagtagcgggatattcagcctggatactattgacacaaatctggtggaatatctggtgcagcacaggtatgacgtttggcttgttgattggcgcacgtcatgcagcctcccctcgatggtgcgtagggactacactttggacgactgtgcagcctttgactatccagcggctatcgacaaagtcattgaggtcactaagcagaaagatgttcaaattgttgcccactgtgctggatctctggtgtgttttgcctctctactatccggggcgcttgaagggaaagtccggagtgttgtttctagccaggttgccgcaaacccgattccatgtcagttcaacaagctaaaagctggactttacatccccggagtgatgggtgctctaggcattaagggaatgacagtggacacgaacgaccaggctacttggacagagaagctctttaatactttcgtaaagggtgttgatcgtgtgtttttgccttatggcgaactctgccacaatcctgtttgccacaggattagtttcatttatggtctcttatgggaacacgagaatctcaaccagctgacccatgacactttgcaagagttctttggttacataactacagaagtcggcgagcagctggccttgaccatgaaggaaaagaagttggtttcagcttcgggtaaagatatttacttacctgatgtggataaaaaagaacggctgcagtcaccagtctacaaaaagcatatcaatcgattgaatatgcctatctgctttatcgctggagagaaaaacagctgctatttaccagagagcacattaacaacatacaatctggtcaaggaagcacacccgaatcaagagtacgattggattcagataccagagtatggccacttggactgtatttatggcaaagacgcggttcgtgatgtctatccgcacattttgaaggctttggacgcgcatgcctaa

Transcript

evm.model.Ap4.972

ATGATTAATGAGAATGCCAAAATTTTAGTGTTCTTGCGTGAAACGAGATGGCCATGGACACCACAACCTGTTCCATTTAAACCTAACTTCCCTCGGTTGTCATCGCCTCATGCATCAATAAAACCACTATATGACGTGGTGGTTGTTGGCTCCGGTTATGGTGGATCGATTGCTGCCAGCCGCTGCGCTAGAGCAGGTCAGTCCGTGTGTGTTTTGGAGCGCGGAAAGGAGTGGTTACCTGGCGATTTCCCTGAGACGTTCCTGAATGCCTGGAAAGAAGTGCAAATCCATGCTGGTGGAAAGAAAGACAAGATTGAATTGAAGACATTTGAAATCACAATGGAGCTTATTGAGTATGACTTTGCAGGCAAACCGTCTAATCTTTACGAGTTCTACGTGACTGATGACTTGAGCGTGGTCCAGGGGTGCGGACTTGGAGGAGGTTCTCTCATCAACGCAAATGTTGGCCTTGACGCCGAGCCCACCGTATTTAAGCACACGTTGTGGCCAGTGGAACTTAAGCGCGACTTGACCAACTTGATGTCTGTCGATCGAAAGCACGTGGTAGAAATGTTGAAGCCGACCCCATATCCGGATAACTACCCTGAATTACATAAAATGAAACGTATGAAGGATGGTCTGCAAGAATTTGACATAGAGGATATTGATCGGATGTTCTATAAAACTCCACTGTATGTCACATTCGAGGACACACCGTCCAATCATGTTGGAGTGCCACAGCCAAAATGTACCGCCTGTGGAAACTGCTGCGGTGGATGTAACGTTGGTGCTAAAAACACGCTGAACCTAAATTACTTGCCTGATGCAAAAGCACACGGGGCAGAAATCTTCACTGAGGTAGAAGTCATATCTGTGACTAAGGCATCTGACTTAAAAGACTGGATCGTCAAATACAAGCGCCTTGTTCCAGGGAGTTTCCAAGTTGAGGAAGAATCCATTCGAGCCACTCACGTCATTCTTGGTGCAGGCGCGCTTGGCTCCACCAAACTGCTCCTTCGCTCAAAAGAACGCGGGCTCGACATTTCTGATCAGATAGGTAAGCGTTTTTCGACGAACGGAGACGTTCTGGCCTTCAGCTACAACGGATCTGAGAAGACAAACTCGGTGGGACTGGAAACCAAACATATGACGGAAGACAGCAAGGCGACACCACCTGGTCCCTGTATCACATCAGTTGCGGATTTCCGAAAATCAGGAGATGAAAACGTAAAAAGTCATTTCGTCATTGAGGATGGAACTCCACCATCGGCTATTTCTGGTCTCTACTCAGTTGGCTTGATGGCTGCTGCAAAAGTGGTTGGAGTCGAAAAGTTCGACACAGACGCAGCGATAGAAACGGCTTGGAGGGAATTAAAAGGTCAAGGGATAGACAATTCACTGTCCTTCCTCTGTATGAGTCACGACAATGCAAGTGGCATCATTTCTTACGACAAAAACATCGACAGTGTTGACATTAAATGGGACAGGGTTGGATTCGAAAGCAACTTTAAAATTGTCAATGAGGCATTGGAAAAGGTGGCGAAAGGACTTAAAGGGACATTCGTGAAAAATCCAATGTGGTCAAGTGCTCTTGGTAAAAGCGTTATCTCAGCTCACCCCCTCGGAGGCTGCCCCATGGGAGAGTCAGGACAAACAGCTGTGGTCAATCACGCTGGACAAGTATTCGAAGGTGTGTCCGACCGGGTATTAGATGGACTTTATGTAGTAGACGGTGCGATCCTTCCAGTAGCCGTAGGCGTCAACCCAACTCTTACGATCTCTTGCCTTGCGGAGCGATGCATGCGACTTCTTGCGAAAAGGGAAGGATGGACAATAGACTACGACACATTCAAACCACTTGACAAAACTGACTTTGTTCAAGCAAAGCCTGGAATTCGCTTCACCGAGAAGATGGTGGGAAAATTTACACCGTCAAACGGCGAAACGGAAGTACCTTGTGAATTTACACTTACTATCGAATCTGATGATGTTGAGCGCATGATCAAATGTGATCCGGATCATGCTGCAAAGATTAGCGGCACGGTGACTTGTCTCGCGTTGTCCTCATCCTCTATGTCGGTTTCGGAAGGTCATTTTCAACTTTTCAGCTCAAGTACTGAACACGTAGACACGAAGGAAATGGTTTACAAAATGGTTCTCACTGGAGATCGTGGCAGACAGTATTTCTTCGAAGGTGTCAAGTACGTACACAAGGACCACTTTGGAGAAACAGGATTGAAAGACACCACGACTTTGTTTGTCAAAGTTTACCCACGTGATGAAAATGGGAGAGAGCCTATGGGTAAAGCAACACTCTACATTACATTGCCCAACTTTGCCAAGCAGCTAGCCACCATGGAAATAACCAATACCAACAGTACACGCGAGAAGCTCCACTGGATGTCCCAGTTTGGTGGTTTCTTTACCAAAACTCTCTGGAATGTTTATGGTCCCACTTCTTCAAGCAACAAATACTTCAATCCAGATGCACCACCTAGGAAGAAAAGGCCTCTAAGATTGAATGGCGGCACCCCAGAAATATACAACTGCATCACTAAGGACAAGTTTGAGATAGTCTTGACCCGTTATGAAGGTGGAACAAAAGGTCCTGTTGTTATGTTTCACGGTGCAGGAGTGAGTAGCGGGATATTCAGCCTGGATACTATTGACACAAATCTGGTGGAATATCTGGTGCAGCACAGGTATGACGTTTGGCTTGTTGATTGGCGCACGTCATGCAGCCTCCCCTCGATGGTGCGTAGGGACTACACTTTGGACGACTGTGCAGCCTTTGACTATCCAGCGGCTATCGACAAAGTCATTGAGGTCACTAAGCAGAAAGATGTTCAAATTGTTGCCCACTGTGCTGGATCTCTGGTGTGTTTTGCCTCTCTACTATCCGGGGCGCTTGAAGGGAAAGTCCGGAGTGTTGTTTCTAGCCAGGTTGCCGCAAACCCGATTCCATGTCAGTTCAACAAGCTAAAAGCTGGACTTTACATCCCCGGAGTGATGGGTGCTCTAGGCATTAAGGGAATGACAGTGGACACGAACGACCAGGCTACTTGGACAGAGAAGCTCTTTAATACTTTCGTAAAGGGTGTTGATCGTGTGTTTTTGCCTTATGGCGAACTCTGCCACAATCCTGTTTGCCACAGGATTAGTTTCATTTATGGTCTCTTATGGGAACACGAGAATCTCAACCAGCTGACCCATGACACTTTGCAAGAGTTCTTTGGTTACATAACTACAGAAGTCGGCGAGCAGCTGGCCTTGACCATGAAGGAAAAGAAGTTGGTTTCAGCTTCGGGTAAAGATATTTACTTACCTGATGTGGATAAAAAAGAACGGCTGCAGTCACCAGTCTACAAAAAGCATATCAATCGATTGAATATGCCTATCTGCTTTATCGCTGGAGAGAAAAACAGCTGCTATTTACCAGAGAGCACATTAACAACATACAATCTGGTCAAGGAAGCACACCCGAATCAAGAGTACGATTGGATTCAGATACCAGAGTATGGCCACTTGGACTGTATTTATGGCAAAGACGCGGTTCGTGATGTCTATCCGCACATTTTGAAGGCTTTGGACGCGCATGCCTAAAAGCGTTTAAAGAAAGAAAAGTCCATGAAAAATTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A4D6G3C8	Cholesterol oxidase OS=Acinetobacter baumannii OX=470 GN=choxAB PE=1 SV=1
P9WMV8	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=choD PE=3 SV=1
P9WMV9	Cholesterol oxidase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=choD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001043 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05199 all species →	GMC_oxred_C	GMC oxidoreductase	Domain	Interproscan
PF12697 all species →	Abhydrolase_6	Alpha/beta hydrolase family	Domain	Interproscan
PF00890 all species →	FAD_binding_2	FAD binding domain	Family	Interproscan
PF00732 all species →	GMC_oxred_N	GMC oxidoreductase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036188 all species →	Homologous_superfamily	FAD/NAD(P)-binding domain superfamily	Interproscan
IPR007867 all species →	Domain	Glucose-methanol-choline oxidoreductase, C-terminal	Interproscan
IPR029058 all species →	Homologous_superfamily	Alpha/Beta hydrolase fold	Interproscan
IPR000073 all species →	Domain	Alpha/beta hydrolase fold-1	Interproscan
IPR003953 all species →	Domain	FAD-dependent oxidoreductase 2, FAD binding domain	Interproscan
IPR000172 all species →	Domain	Glucose-methanol-choline oxidoreductase, N-terminal	Interproscan
IPR052542 all species →	Family	Cholesterol Oxidase Enzyme	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47470 all species →	CHOLESTEROL OXIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016614 all species →	Molecular Function	oxidoreductase activity, acting on CH-OH group of donors	Interproscan
GO:0050660 all species →	Molecular Function	flavin adenine dinucleotide binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.972.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.