Gene detail

Detailed information of evm.model.Ap4.998.1.5f15df79 in Astrangia poculata

Genomic Location: Ap4:10476030...10484770
NR annotation: KAJ7372454.1, hypothetical protein OS493_018961 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap4.998.1.5f15df79

atgcatagaagagctctacttggcttaactgtattccatgtgattgcattttttgaagttcccattggcattagtcaaaccgtttcgccaccaacatttgtgacaataggtgctgtgttttctgaccggctccaagcagactacgagacagcgtttagacttgcgatcgacactataaacaacgacaagtccatcttaccaaatacggaacttagagtgatagttaacaaaacagctacgctggatgctttcaaaaatattgaaatggtccagtatctaatacagaaaggagtggtcgccatagttggaccgatgacttcaacaggagtcaagtttacccagccctactgcgcaggcttccacattccgcaacttgctccagtggcaacagatccaaccttctcgtttacaccagctaattttcctttccttgttcgcctcagtccaagcgatacgatccagtgccaggccttggcaggtcttataacgcactataactggactcaaattgcattgttgacttctaaggatgattatggtataaatggcctgttagctttgaaagacatcgccaatcagaaaggatggaaaataactgccaacgaacattttgatcccatcactgacttcagcactcttaacgtgaactcccagctggaagcgattcgaaaaacacgcactcgaattgttgtgttaaacacaatggcacgatacacggttgtaatactgacgcaagctttgcagctgggaatgctgaaggactgggtatggatcgtaaccgatggatctacgaatactcattggagcttggtcccaggagactatccactgcacgagttttacggcgttattggtacacggccatcattcggcactggtaaactgtacccagactttagtaataaatggaaatcaagaggccatgatcgagtcagtacaccagggggaaagagctatgacgctgcacttgttgtggcagccgctttggaccagatgataaaagatgggcttgatgtgaaggagtcctcccttgagttcgattttggaggaaaagtgactaccaaaccttggcaaccgggtcaaaaacttatggactatattaaaagtgtctctattgatggtctgatgtcatccctatcctttgatgaacatggttctcctggctatgctgaatacgatattgcaaacttgggaagaacgggctttattcaggtcggtcattggaattcaagagatggcgtagtgatggaccctcgccagcctgtcatctggttatctggttctactactgttcccaaggatacatcaacagtagttgagaacacaaccataagaattgttactgtccttgagaagccgttcgtgtccgtcaaggtatccaagaccggtgagaaaacttatacgggtttatgtatcgacttgttggaaaaacttcaggagaagatgaaattcaggtacacgatcgaagaatctccaggcaatgtgtatggagcacccgatgtgttctctggggaatggagtggaatggttcgatatctcattgataataaagctgatctcgcgattggtccgttcaccatcagctcaagcagacagacagttatcgattttactcaacccttcatggacgtgggcttgtcgatcctaatgaagaaagaagaagacagtaaatataaggtgttctctttccttcgcccatttgactttaatctttggcttgccattgtatccacaacattagtcgttggcgtttttctgtggctccacagtacgtttagtccgtatggatatcacggaagagtcgcacagaccagagactcaaggactgtcaccaaagatgaaatcaagaccaaggatcatttgcggtttttcaacgccatttggtcctcgtttgcttattacgtcagtcaaggcccggatgttttgcatcccgtatctctgtctggaagaatcgctgtgggcgtttggtggtttgcagtgttaatcattggggccacgtacacagcaaatcttgcatccttcctaatcgtccaacggtttcaaaccccagtgcaatcggtggaggatttagctcgtcaaaccaagatcgagtatggaatcccgggaaatggtcaaacacaaacatacttccaaatgtcaaccataccaacctacgtcacaatgtgggagttcatgaagtccagtgatacaatccttaagaattccaccgaaggaatcagaagagttcgcaagggcgattttgcctttatatttgattctgtcgtgctggaataccacgttcaccagccaccatgcaatacacttcacacaattggaagggtatttggaaagtttggttacggatttggccttcagaagaattctccgttcacgcatcactttagcatcaatgtgctggaactcaggcagaaggggtatatggaaacaatgaagaataaatggctaactgggacatgcgacaacgatgaaacagatccccgcaacatttctccaaaaagaaaccttttaacctga

Transcript

evm.model.Ap4.998.1.5f15df79

ATGCATAGAAGAGCTCTACTTGGCTTAACTGTATTCCATGTGATTGCATTTTTTGAAGTTCCCATTGGCATTAGTCAAACCGTTTCGCCACCAACATTTGTGACAATAGGTGCTGTGTTTTCTGACCGGCTCCAAGCAGACTACGAGACAGCGTTTAGACTTGCGATCGACACTATAAACAACGACAAGTCCATCTTACCAAATACGGAACTTAGAGTGATAGTTAACAAAACAGCTACGCTGGATGCTTTCAAAAATATTGAAATGGTCCAGTATCTAATACAGAAAGGAGTGGTCGCCATAGTTGGACCGATGACTTCAACAGGAGTCAAGTTTACCCAGCCCTACTGCGCAGGCTTCCACATTCCGCAACTTGCTCCAGTGGCAACAGATCCAACCTTCTCGTTTACACCAGCTAATTTTCCTTTCCTTGTTCGCCTCAGTCCAAGCGATACGATCCAGTGCCAGGCCTTGGCAGGTCTTATAACGCACTATAACTGGACTCAAATTGCATTGTTGACTTCTAAGGATGATTATGGTATAAATGGCCTGTTAGCTTTGAAAGACATCGCCAATCAGAAAGGATGGAAAATAACTGCCAACGAACATTTTGATCCCATCACTGACTTCAGCACTCTTAACGTGAACTCCCAGCTGGAAGCGATTCGAAAAACACGCACTCGAATTGTTGTGTTAAACACAATGGCACGATACACGGTTGTAATACTGACGCAAGCTTTGCAGCTGGGAATGCTGAAGGACTGGGTATGGATCGTAACCGATGGATCTACGAATACTCATTGGAGCTTGGTCCCAGGAGACTATCCACTGCACGAGTTTTACGGCGTTATTGGTACACGGCCATCATTCGGCACTGGTAAACTGTACCCAGACTTTAGTAATAAATGGAAATCAAGAGGCCATGATCGAGTCAGTACACCAGGGGGAAAGAGCTATGACGCTGCACTTGTTGTGGCAGCCGCTTTGGACCAGATGATAAAAGATGGGCTTGATGTGAAGGAGTCCTCCCTTGAGTTCGATTTTGGAGGAAAAGTGACTACCAAACCTTGGCAACCGGGTCAAAAACTTATGGACTATATTAAAAGTGTCTCTATTGATGGTCTGATGTCATCCCTATCCTTTGATGAACATGGTTCTCCTGGCTATGCTGAATACGATATTGCAAACTTGGGAAGAACGGGCTTTATTCAGGTCGGTCATTGGAATTCAAGAGATGGCGTAGTGATGGACCCTCGCCAGCCTGTCATCTGGTTATCTGGTTCTACTACTGTTCCCAAGGATACATCAACAGTAGTTGAGAACACAACCATAAGAATTGTTACTGTCCTTGAGAAGCCGTTCGTGTCCGTCAAGGTATCCAAGACCGGTGAGAAAACTTATACGGGTTTATGTATCGACTTGTTGGAAAAACTTCAGGAGAAGATGAAATTCAGGTACACGATCGAAGAATCTCCAGGCAATGTGTATGGAGCACCCGATGTGTTCTCTGGGGAATGGAGTGGAATGGTTCGATATCTCATTGATAATAAAGCTGATCTCGCGATTGGTCCGTTCACCATCAGCTCAAGCAGACAGACAGTTATCGATTTTACTCAACCCTTCATGGACGTGGGCTTGTCGATCCTAATGAAGAAAGAAGAAGACAGTAAATATAAGGTGTTCTCTTTCCTTCGCCCATTTGACTTTAATCTTTGGCTTGCCATTGTATCCACAACATTAGTCGTTGGCGTTTTTCTGTGGCTCCACAGTACGTTTAGTCCGTATGGATATCACGGAAGAGTCGCACAGACCAGAGACTCAAGGACTGTCACCAAAGATGAAATCAAGACCAAGGATCATTTGCGGTTTTTCAACGCCATTTGGTCCTCGTTTGCTTATTACGTCAGTCAAGGCCCGGATGTTTTGCATCCCGTATCTCTGTCTGGAAGAATCGCTGTGGGCGTTTGGTGGTTTGCAGTGTTAATCATTGGGGCCACGTACACAGCAAATCTTGCATCCTTCCTAATCGTCCAACGGTTTCAAACCCCAGTGCAATCGGTGGAGGATTTAGCTCGTCAAACCAAGATCGAGTATGGAATCCCGGGAAATGGTCAAACACAAACATACTTCCAAATGTCAACCATACCAACCTACGTCACAATGTGGGAGTTCATGAAGTCCAGTGATACAATCCTTAAGAATTCCACCGAAGGAATCAGAAGAGTTCGCAAGGGCGATTTTGCCTTTATATTTGATTCTGTCGTGCTGGAATACCACGTTCACCAGCCACCATGCAATACACTTCACACAATTGGAAGGGTATTTGGAAAGTTTGGTTACGGATTTGGCCTTCAGAAGAATTCTCCGTTCACGCATCACTTTAGCATCAATGTGCTGGAACTCAGGCAGAAGGGGTATATGGAAACAATGAAGAATAAATGGCTAACTGGGACATGCGACAACGATGAAACAGATCCCCGCAACATTTCTCCAAAAAGAAACCTTTTAACCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P19493	Glutamate receptor 4 OS=Rattus norvegicus OX=10116 GN=Gria4 PE=1 SV=1
Q9Z2W8	Glutamate receptor 4 OS=Mus musculus OX=10090 GN=Gria4 PE=1 SV=2
Q38PU5	Glutamate receptor 4 OS=Macaca fascicularis OX=9541 GN=GRIA4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001435 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00060 all species →	Lig_chan	Ligand-gated ion channel	Family	Interproscan
PF01094 all species →	ANF_receptor	Receptor family ligand binding region	Family	Interproscan
PF10613 all species →	Lig_chan-Glu_bd	Ligated ion channel L-glutamate- and glycine-binding site	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000337 all species →	Family	GPCR, family 3	Interproscan
IPR019594 all species →	Domain	Ionotropic glutamate receptor, L-glutamate and glycine-binding domain	Interproscan
IPR015683 all species →	Family	Ionotropic glutamate receptor	Interproscan
IPR001320 all species →	Domain	Ionotropic glutamate receptor, C-terminal	Interproscan
IPR001828 all species →	Domain	Receptor, ligand binding region	Interproscan
IPR028082 all species →	Homologous_superfamily	Periplasmic binding protein-like I	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18966 all species →	IONOTROPIC GLUTAMATE RECEPTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0015276 all species →	Molecular Function	ligand-gated monoatomic ion channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0008066 all species →	Molecular Function	glutamate receptor activity	Interproscan
GO:0035249 all species →	Biological Process	synaptic transmission, glutamatergic	Interproscan
GO:0038023 all species →	Molecular Function	signaling receptor activity	Interproscan
GO:0050804 all species →	Biological Process	modulation of chemical synaptic transmission	Interproscan
GO:0098839 all species →	Cellular Component	postsynaptic density membrane	Interproscan
GO:1904315 all species →	Molecular Function	transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap4.998.1.5f15df79.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.