Gene detail

Detailed information of evm.model.Ap5.1017 in Astrangia poculata

Genomic Location: Ap5:10689312...10705871
NR annotation: XP_027049320.1, uncharacterized protein LOC113676809 isoform X1 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1017

atgcccaggaagaaaaatcagagtccaaatgcagccatttcaggcagagattcaaccgaaaatatagctcaaaacagtgatgtgcagcaaaaatggcgagacacaacactacgtgaattgcagagtatgttttctggttcaattgatcctgaagttgttcagctggtactgtctgagagcaattataatgtgaatgatgctttggaaaagctttttgttctgagtggaatagaacaatgtcaggcagaaagcaaaccatccccgtcaccagtcagtaaaactttggattcaacatcaacaaaaaggccaaagcccaatagccatgatgaaatatcaagctctgatcagtcagaccttgtagttgactctcatttcactgaatctcattttggtgctacagcagcaatgtcaaagccatcttcatttggaaatgttcattctgacggcagttctttgacagtaacctcaaaagatgaaatgaaacctcctttagtatataacgcaacagggacccagcattcaacagttgctccaagtcctcttccatctttcaccttaccatctagtcctttttacagtggaaatgttaaaaatacccaaggcgcaatgccgccagatttgtgcgttgttagcccaagccctgttatgtcgtcgggtattccagattttcctgacaacatttcacaacagtttaaaacactaaagaatcaagcaaaaggagctagtaatcatgaaagattattttctcaagaacttcctggacataaagatttgttgtataatacaaacggaagaccacctgtggtacaaaaagttcctggtcattttgaatttggtcgaccgcctgatgtgactttgcataatcgtgatcaagagtttaaaggaaacttcgagtcttttcttaagcaagtgatatcaggaaattcaagcacagaggactggaagaaaacttctcatgctaatagtactgaaaagaaagaattagatttggagctaagtaaaaagggatcacataatcaaaatatgtctgctgcacatagttctgataataaaacacaagtgccaaacaatgaaagtcaaaggacttcaaatagaaatacacctatccagacaaatggtcaaaactttaagttttctggtcattcacagaaagtccaacagatgactcctaatcacaatgctaatagacctcacttgcagcaaaaagcaaacactacttatcaactaccacatcaaaacactttcaacactttacccaaagaaccaatgttccgaccaccgcctgctatacaaaggcaatttcaaccatttgcacgtcctcaaggattcagtcagacagttccaggaaatatgtcacaagcaaggtttgctcttttgccgacaccacgatcgtcatggcaacaaggacctgtggtacagagacctatgtctgcaggacgtatgccgtaccaataccctcaggggacaagcccatttcaaccccagttttcattcggaagagacagtttcttccttcttgaagtacattgtaaaaatgagattcgtgaccagccagtcagttgctacagcaacttgacagattgcgaggggataacctgcagtggagcagtgctccaatctgtgaggctgaaaggtgcccatggtgttgtgttttcaacagatgactacttttacaggaatcaacggtatgaatttgatgtgagcttacttggagaggcacatgggtggaatcaacagcgagccaaaagtgctttagaaaagcttcaatccccagtgattattgacaacaccaatacacaggcgtgggagatgaaaccttatgtgtctatggccttaaagtacggctaccacatcaaatttgttgaaccagacaccagttggaaatggaatgttaaagaactagcgaggaggaatcaacatggagtgagcattgcagctattataagaatgaaagaacgttatgaacatggcgtcactgtagaaatgattataaactccgagagaaaacttgatgctaataagattggaaatgaatctgagactagaaaggggactggtgccgacaatcaaaatgccaatcccaggcctcaaagttcaccgcaagaaagaggctctcaggtactgggtacgagaacagcagagaactacggtgtagcgtctagagagaaaacgactccgaaagtagcggaaagtgctgtgattagttctctccaagttaaagaaggtcagaacagcctagtagcaaaagaagaaaggtttcaagggcttagaaacaccagcgaaaaaggctttaacggtgttgaagaatcagacagtggcgcaaaaaatggagagaagacagaaagctgcacttctgtagttcatgggattgatatcagcgagctcggaaatggagcagatgaagtcattacagaagaaactgattcgaattctggtccaaagccacagcgaattcaaaggataagagaaagaaagtcgccaaataggcaacagctaacgagtacagagctgtcaacacttggttgtgaagatgagacgagtgatggacgccaagataccttcacagcttgcgacggtcataatgaactcaacgtgaattccaaatctagccaagaaaatgcagcacaagaaggcaacgcggtgtttcgtgtcgagaagctgtcaacactcgcgtccttagctaacaactgtatgttttctccagctctttcctcagatgaaactgtcgaaaacagccctgctgcaattgaagttgcagacgtttcagagtcctcaatctcctcgctttcggagagtccgttagcagattgtatctctcctgttttgaattcttcctccgtggagtctgatggagaagaaaacgcagagaacagcggcttcagtaatgagcccactgaaggaaaactcacttgtgacgtgggattacccgatagaccgacttcgttgtctcttgcgcttcctcttgaagatgacgtcacagacgctattgctgacaacggaaatgacctggtaaaacatcgagagccgcgtggaagcaattcttcctgtacccctccacccttgtcagctattttgtcttcagcttcaagaacgaggctgaaaagacgttcaaggtccaacagtgatccaacgcagctaaccacagattctgtggactctcgccagggaaatggtctggaactgctcgtggaaccaaaccaggcagacaagagcttggagccgaatgagtctctacaaagcgtttctgatcaaacctccattcaagaaactcacatttcagtcgaagatgttgccactggcgcgcagaacctgccaaacctgtctgacttgttgccaccgggtttatccggggactcgcagaatgacatgacctctggtgtggagtttttgaaaacgtgtttcccggatgtggacagtgaattgatgaacgcgttgttaaccacaaatagcggtgatgtgatgaaagtggttgaagaattgctcgccagtggaaggacagaagaaaatgcagaagaaatagaagctaacgagcagaacgctccttccactgagcttccaacctttccagattcgcttctcttgccctcgcagaccaaacccttttacgttttgaatgaagaaaagaatcctcttataccaaccgaggaaatagtcaaggttgctcaacccgctggtggattaaatcaacaaagcagtgatactcgtgtaaacggcgaaatttccagcggcgcttctgtccaagagaacacaccaagtcagcccaggaatctgggaccaagacctttggctcaagcccagtctcccggtcaaagcaacgctgcaacgtttcagctaacccttgagcccgcagtagctctgcacctgattgagatgtttggttcttttgctggagttgactttcaagaggatatcagtcatgaggatcttatcatagatgtggacagctctttagcgagacagttgtacaaaaaatgggaaaagagtattcagataagaaaggggattcctgctgcaagaggtagttcaccgaaaacaaaaagagaaccgactgggaacgatttattccaactaagtcgtgaccaggctccttcaaacagccaacggtcaccttctcgtttgcggaaggaaccccaagcagggaacttgagagaaatcatggacgaacaacttgctctagagctgagtaggaatgtccctgatgtgactgaacaagacatagctaccaaactaaaaagacagaaactttatgaaatgtttcccggtatagaccccgtggctttagaagaagtatttcaagccaatcgttttgaactggcaccatcagtagaagctgtgaaggcgtcgtgtaatttgcatggtcgggaaatccccagcactgttatagcaagtgggtttagtggccgagtagcgaatcaaggggaaaccacaagaaaggaagcagaagaggactggagctggttagacttggacgcttcctctcagccaagatcggacgaagcctcgttccagaccctagatgagccaagctacctggattatcgcgcagaagcttttcaacattgcaagcagcgagatgagtgttttaaaaaggctgcactggctttctccaagaaacaaggccagctggctcagttttacgcacagcagggtcatatgcacaccgagaaaatcaaagaagcaaatgcaagagcggcggctttaattctggatcaaaagaatgagtctttagacgagaacacaattgatttacatggtttgcatgttaccgaggccattgaagctcttgaaagcatgctgatggaaagaaccgaacctcacggtggtcagtccaggagaggttgcaagtccatctccgtggtaaccggaagaggaaatcacagtcgtggaggaaaggctcgaataaaacctgctatcttagaatatctcaagaaacacaactataggtttactgaaccacatcctggtcttgttaaagtttatctgtag

Transcript

evm.model.Ap5.1017

ATGCCCAGGAAGAAAAATCAGAGTCCAAATGCAGCCATTTCAGGCAGAGATTCAACCGAAAATATAGCTCAAAACAGTGATGTGCAGCAAAAATGGCGAGACACAACACTACGTGAATTGCAGAGTATGTTTTCTGGTTCAATTGATCCTGAAGTTGTTCAGCTGGTACTGTCTGAGAGCAATTATAATGTGAATGATGCTTTGGAAAAGCTTTTTGTTCTGAGTGGAATAGAACAATGTCAGGCAGAAAGCAAACCATCCCCGTCACCAGTCAGTAAAACTTTGGATTCAACATCAACAAAAAGGCCAAAGCCCAATAGCCATGATGAAATATCAAGCTCTGATCAGTCAGACCTTGTAGTTGACTCTCATTTCACTGAATCTCATTTTGGTGCTACAGCAGCAATGTCAAAGCCATCTTCATTTGGAAATGTTCATTCTGACGGCAGTTCTTTGACAGTAACCTCAAAAGATGAAATGAAACCTCCTTTAGTATATAACGCAACAGGGACCCAGCATTCAACAGTTGCTCCAAGTCCTCTTCCATCTTTCACCTTACCATCTAGTCCTTTTTACAGTGGAAATGTTAAAAATACCCAAGGCGCAATGCCGCCAGATTTGTGCGTTGTTAGCCCAAGCCCTGTTATGTCGTCGGGTATTCCAGATTTTCCTGACAACATTTCACAACAGTTTAAAACACTAAAGAATCAAGCAAAAGGAGCTAGTAATCATGAAAGATTATTTTCTCAAGAACTTCCTGGACATAAAGATTTGTTGTATAATACAAACGGAAGACCACCTGTGGTACAAAAAGTTCCTGGTCATTTTGAATTTGGTCGACCGCCTGATGTGACTTTGCATAATCGTGATCAAGAGTTTAAAGGAAACTTCGAGTCTTTTCTTAAGCAAGTGATATCAGGAAATTCAAGCACAGAGGACTGGAAGAAAACTTCTCATGCTAATAGTACTGAAAAGAAAGAATTAGATTTGGAGCTAAGTAAAAAGGGATCACATAATCAAAATATGTCTGCTGCACATAGTTCTGATAATAAAACACAAGTGCCAAACAATGAAAGTCAAAGGACTTCAAATAGAAATACACCTATCCAGACAAATGGTCAAAACTTTAAGTTTTCTGGTCATTCACAGAAAGTCCAACAGATGACTCCTAATCACAATGCTAATAGACCTCACTTGCAGCAAAAAGCAAACACTACTTATCAACTACCACATCAAAACACTTTCAACACTTTACCCAAAGAACCAATGTTCCGACCACCGCCTGCTATACAAAGGCAATTTCAACCATTTGCACGTCCTCAAGGATTCAGTCAGACAGTTCCAGGAAATATGTCACAAGCAAGGTTTGCTCTTTTGCCGACACCACGATCGTCATGGCAACAAGGACCTGTGGTACAGAGACCTATGTCTGCAGGACGTATGCCGTACCAATACCCTCAGGGGACAAGCCCATTTCAACCCCAGTTTTCATTCGGAAGAGACAGTTTCTTCCTTCTTGAAGTACATTGTAAAAATGAGATTCGTGACCAGCCAGTCAGTTGCTACAGCAACTTGACAGATTGCGAGGGGATAACCTGCAGTGGAGCAGTGCTCCAATCTGTGAGGCTGAAAGGTGCCCATGGTGTTGTGTTTTCAACAGATGACTACTTTTACAGGAATCAACGGTATGAATTTGATGTGAGCTTACTTGGAGAGGCACATGGGTGGAATCAACAGCGAGCCAAAAGTGCTTTAGAAAAGCTTCAATCCCCAGTGATTATTGACAACACCAATACACAGGCGTGGGAGATGAAACCTTATGTGTCTATGGCCTTAAAGTACGGCTACCACATCAAATTTGTTGAACCAGACACCAGTTGGAAATGGAATGTTAAAGAACTAGCGAGGAGGAATCAACATGGAGTGAGCATTGCAGCTATTATAAGAATGAAAGAACGTTATGAACATGGCGTCACTGTAGAAATGATTATAAACTCCGAGAGAAAACTTGATGCTAATAAGATTGGAAATGAATCTGAGACTAGAAAGGGGACTGGTGCCGACAATCAAAATGCCAATCCCAGGCCTCAAAGTTCACCGCAAGAAAGAGGCTCTCAGGTACTGGGTACGAGAACAGCAGAGAACTACGGTGTAGCGTCTAGAGAGAAAACGACTCCGAAAGTAGCGGAAAGTGCTGTGATTAGTTCTCTCCAAGTTAAAGAAGGTCAGAACAGCCTAGTAGCAAAAGAAGAAAGGTTTCAAGGGCTTAGAAACACCAGCGAAAAAGGCTTTAACGGTGTTGAAGAATCAGACAGTGGCGCAAAAAATGGAGAGAAGACAGAAAGCTGCACTTCTGTAGTTCATGGGATTGATATCAGCGAGCTCGGAAATGGAGCAGATGAAGTCATTACAGAAGAAACTGATTCGAATTCTGGTCCAAAGCCACAGCGAATTCAAAGGATAAGAGAAAGAAAGTCGCCAAATAGGCAACAGCTAACGAGTACAGAGCTGTCAACACTTGGTTGTGAAGATGAGACGAGTGATGGACGCCAAGATACCTTCACAGCTTGCGACGGTCATAATGAACTCAACGTGAATTCCAAATCTAGCCAAGAAAATGCAGCACAAGAAGGCAACGCGGTGTTTCGTGTCGAGAAGCTGTCAACACTCGCGTCCTTAGCTAACAACTGTATGTTTTCTCCAGCTCTTTCCTCAGATGAAACTGTCGAAAACAGCCCTGCTGCAATTGAAGTTGCAGACGTTTCAGAGTCCTCAATCTCCTCGCTTTCGGAGAGTCCGTTAGCAGATTGTATCTCTCCTGTTTTGAATTCTTCCTCCGTGGAGTCTGATGGAGAAGAAAACGCAGAGAACAGCGGCTTCAGTAATGAGCCCACTGAAGGAAAACTCACTTGTGACGTGGGATTACCCGATAGACCGACTTCGTTGTCTCTTGCGCTTCCTCTTGAAGATGACGTCACAGACGCTATTGCTGACAACGGAAATGACCTGGTAAAACATCGAGAGCCGCGTGGAAGCAATTCTTCCTGTACCCCTCCACCCTTGTCAGCTATTTTGTCTTCAGCTTCAAGAACGAGGCTGAAAAGACGTTCAAGGTCCAACAGTGATCCAACGCAGCTAACCACAGATTCTGTGGACTCTCGCCAGGGAAATGGTCTGGAACTGCTCGTGGAACCAAACCAGGCAGACAAGAGCTTGGAGCCGAATGAGTCTCTACAAAGCGTTTCTGATCAAACCTCCATTCAAGAAACTCACATTTCAGTCGAAGATGTTGCCACTGGCGCGCAGAACCTGCCAAACCTGTCTGACTTGTTGCCACCGGGTTTATCCGGGGACTCGCAGAATGACATGACCTCTGGTGTGGAGTTTTTGAAAACGTGTTTCCCGGATGTGGACAGTGAATTGATGAACGCGTTGTTAACCACAAATAGCGGTGATGTGATGAAAGTGGTTGAAGAATTGCTCGCCAGTGGAAGGACAGAAGAAAATGCAGAAGAAATAGAAGCTAACGAGCAGAACGCTCCTTCCACTGAGCTTCCAACCTTTCCAGATTCGCTTCTCTTGCCCTCGCAGACCAAACCCTTTTACGTTTTGAATGAAGAAAAGAATCCTCTTATACCAACCGAGGAAATAGTCAAGGTTGCTCAACCCGCTGGTGGATTAAATCAACAAAGCAGTGATACTCGTGTAAACGGCGAAATTTCCAGCGGCGCTTCTGTCCAAGAGAACACACCAAGTCAGCCCAGGAATCTGGGACCAAGACCTTTGGCTCAAGCCCAGTCTCCCGGTCAAAGCAACGCTGCAACGTTTCAGCTAACCCTTGAGCCCGCAGTAGCTCTGCACCTGATTGAGATGTTTGGTTCTTTTGCTGGAGTTGACTTTCAAGAGGATATCAGTCATGAGGATCTTATCATAGATGTGGACAGCTCTTTAGCGAGACAGTTGTACAAAAAATGGGAAAAGAGTATTCAGATAAGAAAGGGGATTCCTGCTGCAAGAGGTAGTTCACCGAAAACAAAAAGAGAACCGACTGGGAACGATTTATTCCAACTAAGTCGTGACCAGGCTCCTTCAAACAGCCAACGGTCACCTTCTCGTTTGCGGAAGGAACCCCAAGCAGGGAACTTGAGAGAAATCATGGACGAACAACTTGCTCTAGAGCTGAGTAGGAATGTCCCTGATGTGACTGAACAAGACATAGCTACCAAACTAAAAAGACAGAAACTTTATGAAATGTTTCCCGGTATAGACCCCGTGGCTTTAGAAGAAGTATTTCAAGCCAATCGTTTTGAACTGGCACCATCAGTAGAAGCTGTGAAGGCGTCGTGTAATTTGCATGGTCGGGAAATCCCCAGCACTGTTATAGCAAGTGGGTTTAGTGGCCGAGTAGCGAATCAAGGGGAAACCACAAGAAAGGAAGCAGAAGAGGACTGGAGCTGGTTAGACTTGGACGCTTCCTCTCAGCCAAGATCGGACGAAGCCTCGTTCCAGACCCTAGATGAGCCAAGCTACCTGGATTATCGCGCAGAAGCTTTTCAACATTGCAAGCAGCGAGATGAGTGTTTTAAAAAGGCTGCACTGGCTTTCTCCAAGAAACAAGGCCAGCTGGCTCAGTTTTACGCACAGCAGGGTCATATGCACACCGAGAAAATCAAAGAAGCAAATGCAAGAGCGGCGGCTTTAATTCTGGATCAAAAGAATGAGTCTTTAGACGAGAACACAATTGATTTACATGGTTTGCATGTTACCGAGGCCATTGAAGCTCTTGAAAGCATGCTGATGGAAAGAACCGAACCTCACGGTGGTCAGTCCAGGAGAGGTTGCAAGTCCATCTCCGTGGTAACCGGAAGAGGAAATCACAGTCGTGGAGGAAAGGCTCGAATAAAACCTGCTATCTTAGAATATCTCAAGAAACACAACTATAGGTTTACTGAACCACATCCTGGTCTTGTTAAAGTTTATCTGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q86UW6	NEDD4-binding protein 2 OS=Homo sapiens OX=9606 GN=N4BP2 PE=1 SV=2
Q3V2Q8	NEDD4-binding protein 2-like 1 OS=Mus musculus OX=10090 GN=N4bp2l1 PE=1 SV=1
Q66H65	NEDD4-binding protein 2-like 2 OS=Rattus norvegicus OX=10116 GN=N4bp2l2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003820 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08590 all species →	DUF1771	Domain of unknown function (DUF1771)	Domain	Interproscan
PF13671 all species →	AAA_33	AAA domain	Domain	Interproscan
PF01713 all species →	Smr	Smr domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013899 all species →	Domain	Domain of unknown function DUF1771	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR052772 all species →	Family	Endonuclease/Polynucleotide Kinase Domain-Containing Protein	Interproscan
IPR036063 all species →	Homologous_superfamily	Smr domain superfamily	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR002625 all species →	Domain	Smr domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46535 all species →	NEDD4-BINDING PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004519 all species →	Molecular Function	endonuclease activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.1017.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.