Gene detail

Detailed information of evm.model.Ap5.1120 in Astrangia poculata

Genomic Location: Ap5:11737655...11754991
NR annotation: RMX38379.1, hypothetical protein pdam_00005515 [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1120

atgcctatgctccaggaacatggcataatctacattctcaatggaagtcctttcttcacttctgtgaacaatttaccttcgctcccctaccagcttcaccccagaaactgtcggcatacatgtatgcttcctttctactttctatcatgcaaaacgcaaaacactttcactttgaatctcaccaagaaaggactcaagtgtacaatgggttcctccccaccccagaaacatcctatcacgccagacatcttagattccatgcgtccctttctcgatttgaccacactgcctcacgcagctctttgggccttgtttaccacagcgttcttttcttttctgcgtaagtcaaatctggttgcgccttcagcctcttcgttcaacactgctcaacacctggctcggcatgacattaaattcaccgactctggtgccttattacgtatcaagtggtccgaaacacgtcagtttaaggaaggagttcacatcatcccacttccaagcattccaaactcgccactttgccctgtgtcagctattcatcattatttcatattggttccctcaccttctattgtgccgtttttctgtcttccgacggacggatgtccaagattcactccactcactgctaattactttacttcctctctcaaacgacttttacgcttgatcgtattacctagctcaggctgtggagccacctatgcttatcggcaggcgtcagaacatttaatcaagttcacgggattggccgatgctaccaggtttaatctttgcttcatggcggaggctgaactgaacaagaacagaccacagtatatcaaggccaaagagaaaacttctcatgtcttaaaacggattgaaacctccaagaaagcttatgacaaggccaagaatgtacataaaaaacaccaagcggagattaaagaacttgagcatgagctggaggaagtacgcaatgcagccgaaaaatatgaggaagaaatttcaggagcaagtcaagatgaaaatgtagaactaatggactctcagcttgaacagtataatgcactgaaggaacaagcaggaagggaaactgcagccctcaagctacagctagacaagattgtcagggagcagaattccgaacaggaatctcttgatcagttaaaacagaagaaagcagatcttatggctcaacagaaacacaagacagatcaaaggactcagttgatggagagaattgaaaaacttgatgagtatatcagcaccaatatacagactgtggagaagctgaagcaagatcatgacaaaatggaggcagagatcaacaattacacgagcacgagttcatccgggaactcgagaacagatgatgtaatcaaaactaatgccaatactcgtcacttggaagttagtcatcagctggaggatgtgcagggaaaactgaatgaggccaagatggataaaaatgaaagtactagacatcagaaaaaacaagaactgttggacagtatcaagaggctttttccaggggtttatggccgacttatagatctctgtgaaccagtgcacaaaaagtatacccttgcaataactagggttcttggaagaaacatggatgctattgttgtggatacagaaaaaactggaaaagactgcattcaatatttaagagaacagcgagcggatcctgagatgtttcttccactggacagcattcaggtcaagtctgtcaatgaaaagttgaggcagattggtggcactgcaaagctggttattgatgtgattaaatatgaaccagcagttattaagaaagccctgcaatttgcttgtgcaaatgcccttgtctgtgatggaatggaggaagcaaggaagttagcatttgggggagcagagagaaagaagacagtctcattagatggtactttgttccagaagtctggtgtcatttctggtggagtaagtgacctaaaggctaaggccagacgatgggatgaaaagcaagttgatgcactgaaacgaaaccgagacagtttcttaggagaattgaaagaactgagcaaacatcgcagaaaagagccagaactgcaaaacttgaagtctcagattgatggacttgaaaatcgattgagatactccacaaaggacaaagaaactacagagaaacaaacattaggtgagatttccaaggagttaaagatcatcaaaaaagaactggatagcctggagcccaaaagggagaagttgctactttcaatggctgcaagaagtgaagaaatcaccaacacagaaaaaagaatgaacagggtggaggaccaagtttttagaggattctgtgagcaaatcaatgtggaaaacatcaggaaacaaacaatagaaggaaattcttatgattctaatacaaggtgtggtggtgtgacatatgggaagttcatgatgtaa

Transcript

evm.model.Ap5.1120

ATGCCTATGCTCCAGGAACATGGCATAATCTACATTCTCAATGGAAGTCCTTTCTTCACTTCTGTGAACAATTTACCTTCGCTCCCCTACCAGCTTCACCCCAGAAACTGTCGGCATACATGTATGCTTCCTTTCTACTTTCTATCATGCAAAACGCAAAACACTTTCACTTTGAATCTCACCAAGAAAGGACTCAAGTGTACAATGGGTTCCTCCCCACCCCAGAAACATCCTATCACGCCAGACATCTTAGATTCCATGCGTCCCTTTCTCGATTTGACCACACTGCCTCACGCAGCTCTTTGGGCCTTGTTTACCACAGCGTTCTTTTCTTTTCTGCGTAAGTCAAATCTGGTTGCGCCTTCAGCCTCTTCGTTCAACACTGCTCAACACCTGGCTCGGCATGACATTAAATTCACCGACTCTGGTGCCTTATTACGTATCAAGTGGTCCGAAACACGTCAGTTTAAGGAAGGAGTTCACATCATCCCACTTCCAAGCATTCCAAACTCGCCACTTTGCCCTGTGTCAGCTATTCATCATTATTTCATATTGGTTCCCTCACCTTCTATTGTGCCGTTTTTCTGTCTTCCGACGGACGGATGTCCAAGATTCACTCCACTCACTGCTAATTACTTTACTTCCTCTCTCAAACGACTTTTACGCTTGATCGTATTACCTAGCTCAGGCTGTGGAGCCACCTATGCTTATCGGCAGGCGTCAGAACATTTAATCAAGTTCACGGGATTGGCCGATGCTACCAGGTTTAATCTTTGCTTCATGGCGGAGGCTGAACTGAACAAGAACAGACCACAGTATATCAAGGCCAAAGAGAAAACTTCTCATGTCTTAAAACGGATTGAAACCTCCAAGAAAGCTTATGACAAGGCCAAGAATGTACATAAAAAACACCAAGCGGAGATTAAAGAACTTGAGCATGAGCTGGAGGAAGTACGCAATGCAGCCGAAAAATATGAGGAAGAAATTTCAGGAGCAAGTCAAGATGAAAATGTAGAACTAATGGACTCTCAGCTTGAACAGTATAATGCACTGAAGGAACAAGCAGGAAGGGAAACTGCAGCCCTCAAGCTACAGCTAGACAAGATTGTCAGGGAGCAGAATTCCGAACAGGAATCTCTTGATCAGTTAAAACAGAAGAAAGCAGATCTTATGGCTCAACAGAAACACAAGACAGATCAAAGGACTCAGTTGATGGAGAGAATTGAAAAACTTGATGAGTATATCAGCACCAATATACAGACTGTGGAGAAGCTGAAGCAAGATCATGACAAAATGGAGGCAGAGATCAACAATTACACGAGCACGAGTTCATCCGGGAACTCGAGAACAGATGATGTAATCAAAACTAATGCCAATACTCGTCACTTGGAAGTTAGTCATCAGCTGGAGGATGTGCAGGGAAAACTGAATGAGGCCAAGATGGATAAAAATGAAAGTACTAGACATCAGAAAAAACAAGAACTGTTGGACAGTATCAAGAGGCTTTTTCCAGGGGTTTATGGCCGACTTATAGATCTCTGTGAACCAGTGCACAAAAAGTATACCCTTGCAATAACTAGGGTTCTTGGAAGAAACATGGATGCTATTGTTGTGGATACAGAAAAAACTGGAAAAGACTGCATTCAATATTTAAGAGAACAGCGAGCGGATCCTGAGATGTTTCTTCCACTGGACAGCATTCAGGTCAAGTCTGTCAATGAAAAGTTGAGGCAGATTGGTGGCACTGCAAAGCTGGTTATTGATGTGATTAAATATGAACCAGCAGTTATTAAGAAAGCCCTGCAATTTGCTTGTGCAAATGCCCTTGTCTGTGATGGAATGGAGGAAGCAAGGAAGTTAGCATTTGGGGGAGCAGAGAGAAAGAAGACAGTCTCATTAGATGGTACTTTGTTCCAGAAGTCTGGTGTCATTTCTGGTGGAGTAAGTGACCTAAAGGCTAAGGCCAGACGATGGGATGAAAAGCAAGTTGATGCACTGAAACGAAACCGAGACAGTTTCTTAGGAGAATTGAAAGAACTGAGCAAACATCGCAGAAAAGAGCCAGAACTGCAAAACTTGAAGTCTCAGATTGATGGACTTGAAAATCGATTGAGATACTCCACAAAGGACAAAGAAACTACAGAGAAACAAACATTAGGTGAGATTTCCAAGGAGTTAAAGATCATCAAAAAAGAACTGGATAGCCTGGAGCCCAAAAGGGAGAAGTTGCTACTTTCAATGGCTGCAAGAAGTGAAGAAATCACCAACACAGAAAAAAGAATGAACAGGGTGGAGGACCAAGTTTTTAGAGGATTCTGTGAGCAAATCAATGTGGAAAACATCAGGAAACAAACAATAGAAGGAAATTCTTATGATTCTAATACAAGGTGTGGTGGTGTGACATATGGGAAGTTCATGATGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O93308	Structural maintenance of chromosomes protein 1A OS=Xenopus laevis OX=8355 GN=smc1a PE=1 SV=1
Q9Z1M9	Structural maintenance of chromosomes protein 1A OS=Rattus norvegicus OX=10116 GN=Smc1a PE=1 SV=1
O97593	Structural maintenance of chromosomes protein 1A OS=Bos taurus OX=9913 GN=SMC1A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002980 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06470 all species →	SMC_hinge	SMC proteins Flexible Hinge Domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR010935 all species →	Domain	SMCs flexible hinge	Interproscan
IPR036277 all species →	Homologous_superfamily	SMCs flexible hinge superfamily	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18937 all species →	STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005694 all species →	Cellular Component	chromosome	Interproscan
GO:0051276 all species →	Biological Process	chromosome organization	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0007062 all species →	Biological Process	sister chromatid cohesion	Interproscan
GO:0008278 all species →	Cellular Component	cohesin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.1120.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.