Detailed information of evm.model.Ap5.1124 in Astrangia poculata

Genomic Location: Ap5:11762456...11769261
NR annotation: XP_015779647.1, PREDICTED: structural maintenance of chromosomes protein 1A-like [Acropora digitifera]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O97593Structural maintenance of chromosomes protein 1A OS=Bos taurus OX=9913 GN=SMC1A PE=1 SV=1
Q14683Structural maintenance of chromosomes protein 1A OS=Homo sapiens OX=9606 GN=SMC1A PE=1 SV=2
Q9CU62Structural maintenance of chromosomes protein 1A OS=Mus musculus OX=10090 GN=Smc1a PE=1 SV=4
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002980 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02463
all species →		SMC_NRecF/RecN/SMC N terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR003395
all species →		DomainRecF/RecN/SMC, N-terminalInterproscan
IPR028468
all species →		DomainSmc1, ATP-binding cassette domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR18937
all species →		STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBERInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005524
all species →		Molecular FunctionATP bindingInterproscan
GO:0007062
all species →		Biological Processsister chromatid cohesionInterproscan
GO:0008278
all species →		Cellular Componentcohesin complexInterproscan
GO:0016887
all species →		Molecular FunctionATP hydrolysis activityInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.1124.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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