Gene detail

Detailed information of evm.model.Ap5.1145 in Astrangia poculata

Genomic Location: Ap5:12179752...12229983
NR annotation: XP_020626847.1, ubiquitin carboxyl-terminal hydrolase 4-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1145

atggctggcgcaagtgaaagttatcatagtgtttcaaccgagcattcagcggaccttgaaacacaaaaaaaggaactagcagaagagctgaaaaagtcgttaactaaaggtgatatatggtaccttgttgactgtcgttggctaaagcaatggaagaagtatgttggctttgatacgtgggatcagtttggtgttggggaagagttaaataatcctggtcctatagataattcaagtctttttgcagccgatggctgttctctaaaagaccacctcattgatgagcttgattacaatttgctacccaaagatgcatggtttaagcttgtttcatggtatggagtgacatcagatcaacaggctctgccaaggaaggttgtggaacatggcatgtatgtcaaaagctgtaaggttgaggtgtaccttatggagttcaaactatcccagcactcagatcccaaaacgttagtaacaaagcaattcagtaaaggagacactgttggtcatgttatgtcacaaatgagaacagtatttgatataccagaagaagctgaaacaagagtgtggaccaaatacatgagcaatacctatgagcttcttagtaacctggaatacactgtgcaggatgctggcctttatcagggacaggttctgattatagaacaaaagaacaaggatggtacttggcaacgccaagcaagacaaagttcttactcaccttcagctgtaacatcaagtaatgaacacagtggtcaatcttcgcattcctacagcaattacagctcaagaagttcttggggatatgatggattaagatcaagtacttccttgccagggcttacaggactcggaaaccttggaaatacatgtttcatgaactctgctcttcagtgcttaagcaactctgtcccactgactgaatattttttagctggtaactacaaagatgaactgaatcgcagtaaccctctaggaatgagaggagagattgccaatgcctatgcaggtcttcttaatcagatctggaatgaacattatagctctgtagcaccaagacaattcaaaatgcaggtgggacggtttgcacctcaattttctggctatcaacaacaagactctcaggaacttcttgctttcttgttggatggacttcatgaggatttaaatcgtgtgaaaaaaaagccatatgtggaaataaaggatgctgatggaaggcctgatgcagttgttgcaaaggagtcctggcacaatcacttgcagaggaacaattccattatcgttgatacatttcatggacttttcaaatccactctggtttgcccagattgcagtaaggtctctgtcacatttgatccattctgctacctatcattgccactgccagttaaaaaggagagaagccttgatatttttcttgtgcgaaatgatcctcttataaaacccaccctgtataaattgactgtgccaaagatgggcaatgttgctgagttactggctgttttgtcaaaagaaaccagtattcccaaagacaagatggtggttacagatgtttataatcataggtttcacaaggtgttttctctaagtgagtcactgactcaaatacttgacagggatgatatttttgtttatgagttgttgcacagcaaacctgagaatgatgacgatgattttgttgttcttccagtttaccaaagagagaaaagagcccgactgactagctatagttatagcagctcaaacaaagctttgtttggactaccactcatgatttctgttccaaggaaaaacttaacttacaagatgttgtacaacatcttattagaccgaatgaaacgctttgttagcatgcctgaggaagatgtaggaatgggatgtaaaaatgaaggtgaaagtgaggccgatgttgaaatgaatgaagataagaatgaaggcagcgataacgaggattgcgaggagagagaattggaaaaggcataccaaaatgtacatgtcaatggagatgaaaatgaggatgatgacatagattcacgaaataatgatcacgacggctcaagtcaaaagaacaagctaaacatgcaatgtaaagaaaagccatgcaagtatctcttcaacttgacactagtcaactcctatggcagtactgatattcaggcattgcaagataatggcaagccactcaaactcacaggacgttgtttccttgcacttgactgggactcaaaggtgaaggaaaagtgctacaatgatcaactggcggaggaatcggaggagcatgaaagtgtgcacaagaagccggcactgaagaagaattgcatttacctgaatgactgcattgatctcttcttgtcaaaagagaagcttggagtaaatgacccatggtattgtccttcgtgtaagaagcatcaacaagccaccaagaagtttgacctttggtctcttcccaaaatccttgttgttcacctaaaacgattctcctacaacagtttctggcgagataagctggacacattggtttcttttcctttgaggagccttgatatgtctgactatgtgattaacaaggaacaaccacgtccaatttacaagttaattgcggtttcaaatcactatggaggcatgggaggtggacattacacagcctatgccaaaaactgcagagatggccgctggtactcatttgatgatagctctgtgtccagtgttgacgaggatcaaattgtctccaaggcagcatatgtcctgttttaccagcggcaagaaactggacaccaagagagtatggaagagaaggaaacagaacatggtcctgcagacattgacatgctccatgatggtcagccgcgaagttttggaatttttacacgtgcaacagcagcagcaattctcaaatgttgcccgctcatggacatttggtgggaaaagtctcatcagtgcatgtcatgtgacccggcatga

Transcript

evm.model.Ap5.1145

ATGGCTGGCGCAAGTGAAAGTTATCATAGTGTTTCAACCGAGCATTCAGCGGACCTTGAAACACAAAAAAAGGAACTAGCAGAAGAGCTGAAAAAGTCGTTAACTAAAGGTGATATATGGTACCTTGTTGACTGTCGTTGGCTAAAGCAATGGAAGAAGTATGTTGGCTTTGATACGTGGGATCAGTTTGGTGTTGGGGAAGAGTTAAATAATCCTGGTCCTATAGATAATTCAAGTCTTTTTGCAGCCGATGGCTGTTCTCTAAAAGACCACCTCATTGATGAGCTTGATTACAATTTGCTACCCAAAGATGCATGGTTTAAGCTTGTTTCATGGTATGGAGTGACATCAGATCAACAGGCTCTGCCAAGGAAGGTTGTGGAACATGGCATGTATGTCAAAAGCTGTAAGGTTGAGGTGTACCTTATGGAGTTCAAACTATCCCAGCACTCAGATCCCAAAACGTTAGTAACAAAGCAATTCAGTAAAGGAGACACTGTTGGTCATGTTATGTCACAAATGAGAACAGTATTTGATATACCAGAAGAAGCTGAAACAAGAGTGTGGACCAAATACATGAGCAATACCTATGAGCTTCTTAGTAACCTGGAATACACTGTGCAGGATGCTGGCCTTTATCAGGGACAGGTTCTGATTATAGAACAAAAGAACAAGGATGGTACTTGGCAACGCCAAGCAAGACAAAGTTCTTACTCACCTTCAGCTGTAACATCAAGTAATGAACACAGTGGTCAATCTTCGCATTCCTACAGCAATTACAGCTCAAGAAGTTCTTGGGGATATGATGGATTAAGATCAAGTACTTCCTTGCCAGGGCTTACAGGACTCGGAAACCTTGGAAATACATGTTTCATGAACTCTGCTCTTCAGTGCTTAAGCAACTCTGTCCCACTGACTGAATATTTTTTAGCTGGTAACTACAAAGATGAACTGAATCGCAGTAACCCTCTAGGAATGAGAGGAGAGATTGCCAATGCCTATGCAGGTCTTCTTAATCAGATCTGGAATGAACATTATAGCTCTGTAGCACCAAGACAATTCAAAATGCAGGTGGGACGGTTTGCACCTCAATTTTCTGGCTATCAACAACAAGACTCTCAGGAACTTCTTGCTTTCTTGTTGGATGGACTTCATGAGGATTTAAATCGTGTGAAAAAAAAGCCATATGTGGAAATAAAGGATGCTGATGGAAGGCCTGATGCAGTTGTTGCAAAGGAGTCCTGGCACAATCACTTGCAGAGGAACAATTCCATTATCGTTGATACATTTCATGGACTTTTCAAATCCACTCTGGTTTGCCCAGATTGCAGTAAGGTCTCTGTCACATTTGATCCATTCTGCTACCTATCATTGCCACTGCCAGTTAAAAAGGAGAGAAGCCTTGATATTTTTCTTGTGCGAAATGATCCTCTTATAAAACCCACCCTGTATAAATTGACTGTGCCAAAGATGGGCAATGTTGCTGAGTTACTGGCTGTTTTGTCAAAAGAAACCAGTATTCCCAAAGACAAGATGGTGGTTACAGATGTTTATAATCATAGGTTTCACAAGGTGTTTTCTCTAAGTGAGTCACTGACTCAAATACTTGACAGGGATGATATTTTTGTTTATGAGTTGTTGCACAGCAAACCTGAGAATGATGACGATGATTTTGTTGTTCTTCCAGTTTACCAAAGAGAGAAAAGAGCCCGACTGACTAGCTATAGTTATAGCAGCTCAAACAAAGCTTTGTTTGGACTACCACTCATGATTTCTGTTCCAAGGAAAAACTTAACTTACAAGATGTTGTACAACATCTTATTAGACCGAATGAAACGCTTTGTTAGCATGCCTGAGGAAGATGTAGGAATGGGATGTAAAAATGAAGGTGAAAGTGAGGCCGATGTTGAAATGAATGAAGATAAGAATGAAGGCAGCGATAACGAGGATTGCGAGGAGAGAGAATTGGAAAAGGCATACCAAAATGTACATGTCAATGGAGATGAAAATGAGGATGATGACATAGATTCACGAAATAATGATCACGACGGCTCAAGTCAAAAGAACAAGCTAAACATGCAATGTAAAGAAAAGCCATGCAAGTATCTCTTCAACTTGACACTAGTCAACTCCTATGGCAGTACTGATATTCAGGCATTGCAAGATAATGGCAAGCCACTCAAACTCACAGGACGTTGTTTCCTTGCACTTGACTGGGACTCAAAGGTGAAGGAAAAGTGCTACAATGATCAACTGGCGGAGGAATCGGAGGAGCATGAAAGTGTGCACAAGAAGCCGGCACTGAAGAAGAATTGCATTTACCTGAATGACTGCATTGATCTCTTCTTGTCAAAAGAGAAGCTTGGAGTAAATGACCCATGGTATTGTCCTTCGTGTAAGAAGCATCAACAAGCCACCAAGAAGTTTGACCTTTGGTCTCTTCCCAAAATCCTTGTTGTTCACCTAAAACGATTCTCCTACAACAGTTTCTGGCGAGATAAGCTGGACACATTGGTTTCTTTTCCTTTGAGGAGCCTTGATATGTCTGACTATGTGATTAACAAGGAACAACCACGTCCAATTTACAAGTTAATTGCGGTTTCAAATCACTATGGAGGCATGGGAGGTGGACATTACACAGCCTATGCCAAAAACTGCAGAGATGGCCGCTGGTACTCATTTGATGATAGCTCTGTGTCCAGTGTTGACGAGGATCAAATTGTCTCCAAGGCAGCATATGTCCTGTTTTACCAGCGGCAAGAAACTGGACACCAAGAGAGTATGGAAGAGAAGGAAACAGAACATGGTCCTGCAGACATTGACATGCTCCATGATGGTCAGCCGCGAAGTTTTGGAATTTTTACACGTGCAACAGCAGCAGCAATTCTCAAATGTTGCCCGCTCATGGACATTTGGTGGGAAAAGTCTCATCAGTGCATGTCATGTGACCCGGCATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A6QR55	Ubiquitin carboxyl-terminal hydrolase 4 OS=Bos taurus OX=9913 GN=USP4 PE=2 SV=1
Q13107	Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens OX=9606 GN=USP4 PE=1 SV=3
P35123	Ubiquitin carboxyl-terminal hydrolase 4 OS=Mus musculus OX=10090 GN=Usp4 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000960 (this species only)
Ubiquitin family	DUB\|USP\|USP · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14533 all species →	USP7_C2	Ubiquitin-specific protease C-terminal	Family	Interproscan
PF06337 all species →	DUSP	DUSP domain	Domain	Interproscan
PF14836 all species →	Ubiquitin_3	Ubiquitin-like domain	Domain	Interproscan
PF00443 all species →	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029346 all species →	Domain	Ubiquitin carboxyl-terminal hydrolase, C-terminal	Interproscan
IPR006615 all species →	Domain	Peptidase C19, ubiquitin-specific peptidase, DUSP domain	Interproscan
IPR028135 all species →	Domain	Ubiquitin-like domain, USP-type	Interproscan
IPR001394 all species →	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR018200 all species →	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR050185 all species →	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR035927 all species →	Homologous_superfamily	DUSP-like superfamily	Interproscan
IPR028889 all species →	Domain	Ubiquitin specific protease domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646 all species →	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004843 all species →	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579 all species →	Biological Process	protein deubiquitination	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.1145.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.