Gene detail

Detailed information of evm.model.Ap5.1152 in Astrangia poculata

Genomic Location: Ap5:12367483...12369929
NR annotation: XP_020624926.1, mastermind-like protein 3 isoform X1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1152

atgaacgaaacgggctctcgacctagtaccggaatgacttcaccacgacatccatcgcaccaagctgtaatggatagattacggcaacgtttcagccagtataggaaacatcattatgattgccagaataaatatgtgcagtcgctgccagctgtccaggacatcgagagacaagaggcactgaatttgcacaagcgtgctcttgatagccgcaatagaatgatgaatatgaacgggaaggcatcaaaacaaaatgacggcgaaggcaaagtcgaacagcaacagccaacgccaaacgtgctcgataagtccacaaatgctatctttcagatacgtgagcagcaaatcctattgaaaaagagaaaacacgagcagaatatgagcagttcacagaattcatacgtgccatcaaatgatgacaaccttggaggggagtgcgtgaagtttcagagacaagatggtggcgttcttcttcaggctccatcaacagaaggccccaacgccgtcgtttcggttaatcagccaaatcagttcgatcatacgtcaacacaagtgcatcagccttcttttcgtatggctaataattcgttcatccacgatggctcgataaatgcatccagaatatcgaccacagttggctcggagacttacgccaatgaagctcagggattgttatcttcgtttgcaccgtcggatttcaagcaggagaaacctgtaattggttcttgcgatgaacccacacattctaacaatggtacaggggcagtggtcaacggattaccagcgggtgaagaatacattcgccaagagcttatccattttgaaaacgttattaaacgctttaacgaggatagtgcacctgtccctccgcagccaattcaccatcaaactgttactgatagagctttaatgcccagtgttgatgacaatagaaatcaggtgcctgaaaccccactgggaggacatcatccacaatctcttcaactgaaagagattgctcgtaagtcacaacttgctcaggctcagcaagttatgccatacatggacagccaagatcgatcaaaccctcaattttcacgacagcatgcaacccagtatgctctaggtccagcaggccagcagtcctctggcatgcaacatccttactcaactggaaaaggcatgtcaatgatttcaaacgaccagcaacaaatgcttcaagacccaaatcaccataggcaatttgaatctccaaagtatcaaagggctctatcttcccagtcacagttgcaacaacaacaaaagcagcagcagcaacaacaaccattttatggctttcctcaggacactttgccgtcatcgaaactaacccacatgccatcacaagttcaacagctatattctcagcggttttcaagtcaaccagtcctgtctacatcacagggagcaggattagttagacctatgccttcacatgaattagcgaggtacccaatgcctagatcacaagcacaatatcagcgtcaaagctcaatgcccccattacagggtcaagcatttgtaaactctgattcccagtttcaacagcaagtaggtggcttccaaggaaaccagcctgggttttcaaatcctgtagatccaacaagtacttaccattatcaacggcgaaattcctttccaatttattatcgtggtaatagccaaccattagaaaacttctcacgtggaatgcagcacaatttgggatctagccaagctaatcttttgagaggcgttttgcaaaatccttcccaaaatatgccaggtgacagagacacatttttggtgaatccaaccatggttttgccttcatctactactgtgcaaacagcacctcttttaactggaaggccaccttcagcaaatggtgagttaaactcaggtgttccaaggtcacataattcatcaattatgtatagaggcaatgttcctcaccaacaacagtctacctctgtactacaacaggcaagtgcatttccaacttcaaataatgcaagaaagattactcctgaaagcagttattcagattcaagtggaacttctgccccaacagctggtagtgatgcacattttagtgcatattcaccacttaatgcacttgacaaagcaccctcatttacttctcttctggagcagtctgctattaatcaagggaatctggaaacaacatacactggatcaatacctaacttggatttgcttggggagcttttaggtcagtaa

Transcript

evm.model.Ap5.1152

ATGAACGAAACGGGCTCTCGACCTAGTACCGGAATGACTTCACCACGACATCCATCGCACCAAGCTGTAATGGATAGATTACGGCAACGTTTCAGCCAGTATAGGAAACATCATTATGATTGCCAGAATAAATATGTGCAGTCGCTGCCAGCTGTCCAGGACATCGAGAGACAAGAGGCACTGAATTTGCACAAGCGTGCTCTTGATAGCCGCAATAGAATGATGAATATGAACGGGAAGGCATCAAAACAAAATGACGGCGAAGGCAAAGTCGAACAGCAACAGCCAACGCCAAACGTGCTCGATAAGTCCACAAATGCTATCTTTCAGATACGTGAGCAGCAAATCCTATTGAAAAAGAGAAAACACGAGCAGAATATGAGCAGTTCACAGAATTCATACGTGCCATCAAATGATGACAACCTTGGAGGGGAGTGCGTGAAGTTTCAGAGACAAGATGGTGGCGTTCTTCTTCAGGCTCCATCAACAGAAGGCCCCAACGCCGTCGTTTCGGTTAATCAGCCAAATCAGTTCGATCATACGTCAACACAAGTGCATCAGCCTTCTTTTCGTATGGCTAATAATTCGTTCATCCACGATGGCTCGATAAATGCATCCAGAATATCGACCACAGTTGGCTCGGAGACTTACGCCAATGAAGCTCAGGGATTGTTATCTTCGTTTGCACCGTCGGATTTCAAGCAGGAGAAACCTGTAATTGGTTCTTGCGATGAACCCACACATTCTAACAATGGTACAGGGGCAGTGGTCAACGGATTACCAGCGGGTGAAGAATACATTCGCCAAGAGCTTATCCATTTTGAAAACGTTATTAAACGCTTTAACGAGGATAGTGCACCTGTCCCTCCGCAGCCAATTCACCATCAAACTGTTACTGATAGAGCTTTAATGCCCAGTGTTGATGACAATAGAAATCAGGTGCCTGAAACCCCACTGGGAGGACATCATCCACAATCTCTTCAACTGAAAGAGATTGCTCGTAAGTCACAACTTGCTCAGGCTCAGCAAGTTATGCCATACATGGACAGCCAAGATCGATCAAACCCTCAATTTTCACGACAGCATGCAACCCAGTATGCTCTAGGTCCAGCAGGCCAGCAGTCCTCTGGCATGCAACATCCTTACTCAACTGGAAAAGGCATGTCAATGATTTCAAACGACCAGCAACAAATGCTTCAAGACCCAAATCACCATAGGCAATTTGAATCTCCAAAGTATCAAAGGGCTCTATCTTCCCAGTCACAGTTGCAACAACAACAAAAGCAGCAGCAGCAACAACAACCATTTTATGGCTTTCCTCAGGACACTTTGCCGTCATCGAAACTAACCCACATGCCATCACAAGTTCAACAGCTATATTCTCAGCGGTTTTCAAGTCAACCAGTCCTGTCTACATCACAGGGAGCAGGATTAGTTAGACCTATGCCTTCACATGAATTAGCGAGGTACCCAATGCCTAGATCACAAGCACAATATCAGCGTCAAAGCTCAATGCCCCCATTACAGGGTCAAGCATTTGTAAACTCTGATTCCCAGTTTCAACAGCAAGTAGGTGGCTTCCAAGGAAACCAGCCTGGGTTTTCAAATCCTGTAGATCCAACAAGTACTTACCATTATCAACGGCGAAATTCCTTTCCAATTTATTATCGTGGTAATAGCCAACCATTAGAAAACTTCTCACGTGGAATGCAGCACAATTTGGGATCTAGCCAAGCTAATCTTTTGAGAGGCGTTTTGCAAAATCCTTCCCAAAATATGCCAGGTGACAGAGACACATTTTTGGTGAATCCAACCATGGTTTTGCCTTCATCTACTACTGTGCAAACAGCACCTCTTTTAACTGGAAGGCCACCTTCAGCAAATGGTGAGTTAAACTCAGGTGTTCCAAGGTCACATAATTCATCAATTATGTATAGAGGCAATGTTCCTCACCAACAACAGTCTACCTCTGTACTACAACAGGCAAGTGCATTTCCAACTTCAAATAATGCAAGAAAGATTACTCCTGAAAGCAGTTATTCAGATTCAAGTGGAACTTCTGCCCCAACAGCTGGTAGTGATGCACATTTTAGTGCATATTCACCACTTAATGCACTTGACAAAGCACCCTCATTTACTTCTCTTCTGGAGCAGTCTGCTATTAATCAAGGGAATCTGGAAACAACATACACTGGATCAATACCTAACTTGGATTTGCTTGGGGAGCTTTTAGGTCAGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009877 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09596 all species →	MamL-1	MamL-1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019082 all species →	Domain	Neurogenic mastermind-like, N-terminal	Interproscan
IPR046370 all species →	Homologous_superfamily	Neurogenic mastermind-like, N-terminal domain superfamily	Interproscan
IPR046369 all species →	Family	Mastermind-like 1-3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15692 all species →	MASTERMIND-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003713 all species →	Molecular Function	transcription coactivator activity	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0016607 all species →	Cellular Component	nuclear speck	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan
GO:0007221 all species →	Biological Process	positive regulation of transcription of Notch receptor target	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06061	MAML; mastermind	-	Human papillomavirus infection	ko05165	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.