Gene detail

Detailed information of evm.model.Ap5.1156_evm.model.Ap5.1161 in Astrangia poculata

Genomic Location: Ap5:12506577...12632818
NR annotation: KAJ7377719.1, U3 snoRNP protein [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1156_evm.model.Ap5.1161

atgtctttttctttcaagttttcgaatatgctaggtactgtttatcgacaaggtaacgtggttttcagtgcggacggtgattgtgttttgagtccagtgggtaacagggcatctgttttcgaccttaaaaataacaagtcatggacactaccttttggaaaccataagacgatatcaagaatttgtttgtcgccagatggcaggataatcattacagttgatgatgatggaaggtgcctcttagctaatttgaaatccaagactgttcttcatcatttcaatttcaaaaagcctgtccttgacctaaagtttagtccatgtggaaggtttatagctgttactcatggaaaacacatcaagatttggcatgctcctgaccatagcaaagagtttgcacccttcactattcacaaaacatatacaggtctttttgatgacactgtatgtatcgactggtctgcagactccagattttttgtggttggcagcagagacatgacaggtcgcatcttttcattatttccagtgcagaattttactccagtcacattgtctggccacagaaacactgtgagaggctgttactttgaagaaaaatcattggatacttacacagtaagttgtgatggtgcactgttttgttggaagtgtaatttacaccttgaagacgtaaaacttactgaatcaaatcccagacaagaaaatgaaaaatcaattgagtggaaaaagtactccaggcactactacaaccaagatggctctgctgaactaacaaccactgcattccacaaaccatcacaccttctgattgctggattttcgactggtgtgttcacactgcatgaagttccagattttattctcattcacactttaagcatatcacagcagagtattaggacagtggctgttaattcgagtggagagtggctggcatttggatgcagtaacacaggacaattgttggtgtgggagtggcaaagtgaaacgtacatactcagacagcaaggtcactactacagtatgaatactctgtgttactcccaagatggacattacattgcaactggtggtgaggatggcaaggttaaactgtggaacgtgctgtcaggcttctgttttgtgacatttagtgaacacaactctgctgttacaagtgttgtatttactccaaacagtcaagtagtgttaagctgctctttggatggcactgtcagagcatttgatctcaacaggtacaggaattttcgtacatttgcctctccccaagcagtccagttctcatgtttgagtgtggacaatagtggggaagtcgtttgtgctggttcacttgatacatttgagattttcttatggtgcatgaaaactggacgacttactgaggtacttactggccatgagggacctctttctgagctggtgttcagcccaactcagccacttttgatatcaggttcctgggacaaaactgtcaggctgtggaacatgtttgatagcaaaatgtcgtgggaaacccttaatttggggtctgatgtgttggcagtgtctgtgcgtcctgatggtgctcaggtagctgtggcatcgttagattgccaggtcactttctttgacataagaacaggtgttcaaagtggatcagtggaaggacgtaaggaccttgcttatggaagaagggcttcagataagattacagccaagaccatgggcatggcaaaatgttttaccagcctgtgttacactgctgatggaaagtgtctcttggcaggtggcagatcaaagtttgtttgtatatatcatgttgatcaacagatgttgttaaaacgatttgaaatttctggcaacctctctttagatggaatgaaggaatttcttcacagtggtaatatgacagaagcaggacctatggaccttattgatgataatgatgatgaaaatgataacaatcagcccagtctgttaaaaggtgatatgagctcacgcagatcccagtcagaagttagagtgaattcactgcagttttcaccaacaggtcagtcatgggcagcagctagtactgaagggctattagtatattctctggaatatgatattgtatttgatccatttcaactggactgtgatatcacccctgacaagatctggcaagttagcagtaacaaggaacacactaaagcactggtgttgagcctcagaataaatgagcaagaactggtttgtcaagttatggaggcagttcaaccttgtgacattcccttggttgtacagtccctgagggagccctatacagaaagactgttgcagttcattgttttacagttggagaagtcacgacatcttcatttttaccttttgtggtgccatcaactattaactgtacatgggcaaaagctgaaactgcttgccagtaggcttttggttatgttgcgtagtttacaaaaaagtgtgacaagacaacaacaggaccttgacaaagtttgttcaagtaacacctatgccctcgcctacatcctagcctttgctggtattctcaaagccgacagcaacagcagtttttccatggaagcatcgtcaatcctttcgtcttctggcaatagtctggacatttcttga

Transcript

evm.model.Ap5.1156_evm.model.Ap5.1161

ATGTCTTTTTCTTTCAAGTTTTCGAATATGCTAGGTACTGTTTATCGACAAGGTAACGTGGTTTTCAGTGCGGACGGTGATTGTGTTTTGAGTCCAGTGGGTAACAGGGCATCTGTTTTCGACCTTAAAAATAACAAGTCATGGACACTACCTTTTGGAAACCATAAGACGATATCAAGAATTTGTTTGTCGCCAGATGGCAGGATAATCATTACAGTTGATGATGATGGAAGGTGCCTCTTAGCTAATTTGAAATCCAAGACTGTTCTTCATCATTTCAATTTCAAAAAGCCTGTCCTTGACCTAAAGTTTAGTCCATGTGGAAGGTTTATAGCTGTTACTCATGGAAAACACATCAAGATTTGGCATGCTCCTGACCATAGCAAAGAGTTTGCACCCTTCACTATTCACAAAACATATACAGGTCTTTTTGATGACACTGTATGTATCGACTGGTCTGCAGACTCCAGATTTTTTGTGGTTGGCAGCAGAGACATGACAGGTCGCATCTTTTCATTATTTCCAGTGCAGAATTTTACTCCAGTCACATTGTCTGGCCACAGAAACACTGTGAGAGGCTGTTACTTTGAAGAAAAATCATTGGATACTTACACAGTAAGTTGTGATGGTGCACTGTTTTGTTGGAAGTGTAATTTACACCTTGAAGACGTAAAACTTACTGAATCAAATCCCAGACAAGAAAATGAAAAATCAATTGAGTGGAAAAAGTACTCCAGGCACTACTACAACCAAGATGGCTCTGCTGAACTAACAACCACTGCATTCCACAAACCATCACACCTTCTGATTGCTGGATTTTCGACTGGTGTGTTCACACTGCATGAAGTTCCAGATTTTATTCTCATTCACACTTTAAGCATATCACAGCAGAGTATTAGGACAGTGGCTGTTAATTCGAGTGGAGAGTGGCTGGCATTTGGATGCAGTAACACAGGACAATTGTTGGTGTGGGAGTGGCAAAGTGAAACGTACATACTCAGACAGCAAGGTCACTACTACAGTATGAATACTCTGTGTTACTCCCAAGATGGACATTACATTGCAACTGGTGGTGAGGATGGCAAGGTTAAACTGTGGAACGTGCTGTCAGGCTTCTGTTTTGTGACATTTAGTGAACACAACTCTGCTGTTACAAGTGTTGTATTTACTCCAAACAGTCAAGTAGTGTTAAGCTGCTCTTTGGATGGCACTGTCAGAGCATTTGATCTCAACAGGTACAGGAATTTTCGTACATTTGCCTCTCCCCAAGCAGTCCAGTTCTCATGTTTGAGTGTGGACAATAGTGGGGAAGTCGTTTGTGCTGGTTCACTTGATACATTTGAGATTTTCTTATGGTGCATGAAAACTGGACGACTTACTGAGGTACTTACTGGCCATGAGGGACCTCTTTCTGAGCTGGTGTTCAGCCCAACTCAGCCACTTTTGATATCAGGTTCCTGGGACAAAACTGTCAGGCTGTGGAACATGTTTGATAGCAAAATGTCGTGGGAAACCCTTAATTTGGGGTCTGATGTGTTGGCAGTGTCTGTGCGTCCTGATGGTGCTCAGGTAGCTGTGGCATCGTTAGATTGCCAGGTCACTTTCTTTGACATAAGAACAGGTGTTCAAAGTGGATCAGTGGAAGGACGTAAGGACCTTGCTTATGGAAGAAGGGCTTCAGATAAGATTACAGCCAAGACCATGGGCATGGCAAAATGTTTTACCAGCCTGTGTTACACTGCTGATGGAAAGTGTCTCTTGGCAGGTGGCAGATCAAAGTTTGTTTGTATATATCATGTTGATCAACAGATGTTGTTAAAACGATTTGAAATTTCTGGCAACCTCTCTTTAGATGGAATGAAGGAATTTCTTCACAGTGGTAATATGACAGAAGCAGGACCTATGGACCTTATTGATGATAATGATGATGAAAATGATAACAATCAGCCCAGTCTGTTAAAAGGTGATATGAGCTCACGCAGATCCCAGTCAGAAGTTAGAGTGAATTCACTGCAGTTTTCACCAACAGGTCAGTCATGGGCAGCAGCTAGTACTGAAGGGCTATTAGTATATTCTCTGGAATATGATATTGTATTTGATCCATTTCAACTGGACTGTGATATCACCCCTGACAAGATCTGGCAAGTTAGCAGTAACAAGGAACACACTAAAGCACTGGTGTTGAGCCTCAGAATAAATGAGCAAGAACTGGTTTGTCAAGTTATGGAGGCAGTTCAACCTTGTGACATTCCCTTGGTTGTACAGTCCCTGAGGGAGCCCTATACAGAAAGACTGTTGCAGTTCATTGTTTTACAGTTGGAGAAGTCACGACATCTTCATTTTTACCTTTTGTGGTGCCATCAACTATTAACTGTACATGGGCAAAAGCTGAAACTGCTTGCCAGTAGGCTTTTGGTTATGTTGCGTAGTTTACAAAAAAGTGTGACAAGACAACAACAGGACCTTGACAAAGTTTGTTCAAGTAACACCTATGCCCTCGCCTACATCCTAGCCTTTGCTGGTATTCTCAAAGCCGACAGCAACAGCAGTTTTTCCATGGAAGCATCGTCAATCCTTTCGTCTTCTGGCAATAGTCTGGACATTTCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15269	Periodic tryptophan protein 2 homolog OS=Homo sapiens OX=9606 GN=PWP2 PE=1 SV=2
Q5RFQ3	Periodic tryptophan protein 2 homolog OS=Pongo abelii OX=9601 GN=PWP2 PE=2 SV=1
Q8BU03	Periodic tryptophan protein 2 homolog OS=Mus musculus OX=10090 GN=Pwp2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003173 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF04003 all species →	Utp12	Dip2/Utp12 Family	Family	Interproscan
PF12894 all species →	ANAPC4_WD40	Anaphase-promoting complex subunit 4 WD40 domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR011044 all species →	Homologous_superfamily	Quinoprotein amine dehydrogenase, beta chain-like	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027145 all species →	Family	Periodic tryptophan protein 2	Interproscan
IPR007148 all species →	Domain	Small-subunit processome, Utp12	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR024977 all species →	Domain	Anaphase-promoting complex subunit 4-like, WD40 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19858 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000028 all species →	Biological Process	ribosomal small subunit assembly	Interproscan
GO:0000462 all species →	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0034388 all species →	Cellular Component	Pwp2p-containing subcomplex of 90S preribosome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14558	PWP2, UTP1; periodic tryptophan protein 2	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.