Gene detail

Detailed information of evm.model.Ap5.117 in Astrangia poculata

Genomic Location: Ap5:1441781...1459620
NR annotation: KAJ7393064.1, ethionine resistance protein [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.117

atgtattcatttaacgccgacttgaaccattctccgaagctaagtcctgcctcaagcgagtcttcaatcggagcgtcttcatcgcccactgcaaattcacctcgcgaaatcaatcgcgaaccattgaatgtcggcgagaaaacgatggctgaaatacaacaagaaaacgctcggctgagaaaggaaattgatgccaaagaaacgaagttaaattccagtatgagaagcattaaaatgttttggagtcctgaattgaagaaagagagatctgcgagaaaatctgaagaagaaaaatacgcaagattaagagagcaatttagtgttgtgtccgaagaatcacagcaaagagcagaaacaattcgagatctgcaagaacgattgcggcaacagcaagattcaacagaacgtctctcaactggtcggccatccctctcttcctccagttcattgtctgggcattcacaagatggacttcagcgagagttagaagtcttaagaggagaaaaagatcgacaggacaatgaaacatttatacttcagagatcgctggaggaattaagttcaaggcttgaagcccagcagcaggccatacaggccaaagatgaaacaatagcgcagttaatggaaatgatacaaagtaataaaggacttgaatctaaacaacttgagatgcataaagagcaacatagcactgacaaaaagaagctggcagaggctctgaatcaactagcaaaactacgagaagacatcgatgaaagggacagggcaattgcatccctacaagaggaaattgaccatgttaaaatcaacaatgttaatgacgaattaaaacaatctgccaacctgctggccaaggatagccatatagcagcattggagacgcaaattcaacagctcgaaggagagatagaaaatctgaaaaagacatcatcagaagatgacaagaagagactagaggacagaaaacaagctgaggtgtatgagagtcactcaaaattcatgaaatccaagattgaatcacttaaagtggatcttggtaagaaagatgcagctcttgcagctgcagataccaaacttgaaactttacaagctcatcaggcaaatcaacaggaacacattgctgtccttcaaacatctctatcagctaaggaacaccacatcaagaatctacagagtgagctgggatctttgcgcagtcgactagatgagagagaagatcttttaaaacagaaggagaagaaactactctcggtatcttcagaacactccgagaattcattcgctgtggagaacctacagagtgtacttagtaccaaagaaaggcagattaccagtcttaaacaaaagtgtgaatgtcttgagagagatctgcaagagaaagattcctccatttcaaccatcaaagctcaactgatttctctaaaggctgaatatgctggctcatctagtaccatctccaatctggaggcgacagtccgagacaaggacagacatatagagatgttacagggtcgaaggcagcgtgatggagctgagagtgaggaggaggtcaaccgggtcaaacgagctcatgacaagctggaagcaagggtggcctctctgtccctgtctctgagagagcaacttgctgacaaagatgaagatattgctagcctagagcaacagattacgtcgttgaagacatcgttacaagacaaaaccgttaaactggcttcctctcaagaaacagtgaaacggctcgaggaacaaatagaacagaagagtagcaaggaggaacatgtgtcatctgatctgacaagtaaaagacttgaaatctccaagctggaaaaggacatcagaaagcaacaaacagagcttagaagcaaagagggcgaggtgaagaaactacaagaagagctgaaagaacagaattggaaactccaacagatggcagatgattgtgaagttaaagatcataaaattgatgagcttgaaaagcagcttagagagcagagcaagaagttggttggtgttaagagaaatcaacaactagagagagaaagacaagctcagctattgaatgaagtcaagaaatcggaggatcagaatgatgagacaaccgaatatttccagagtgagttacagaaaaaggacgagcgcattgcagtcttggaagaagccctcactgaaagcgtatccatcgccgctgaacgggaggaactgctggctcaacaggctcataacgccgagacagcgacacatcgtgtggaagacatggaggcggaaattgaaagagtccgcatagagaccgctgtcaccaacactaagaacgcttccttggtcctcgccttaaacgaaaacgatattatcatgtcgtactacaagtctgaaagacacggaatgatagaacagttactagaaatgaggcaaaacgcgctacttgccacgatctctgagaaagacgcaaacatcgctttactcgagttatcacctacagctggcagtgacgccgaggtgcgaaagttcaaagcagagaaagacaagcttgttaacgagctcaaagaacagacgcagaagcgaatgacgctgctatcaaacgaagaaaacaaagaaatttctctctcgtcggaactctcgcaagcttcaacagaaaagataacagaggctgtaacgctaatagaggacagtatggataaactacaacattacggagaagaactgacggagatttgtgacaaacacttccccgatgtgaagaaaagaattcccaagcttaaacggcgagaaattaatagcattgagaagctaaaaaatgccagtcaaaaacagttgttatccgtgttacagactttggaaagcgacatgcaggtcttacaggacaatgtgcacaagctactagaagtgatcgaggatttcagctatacgtga

Transcript

evm.model.Ap5.117

ATGTATTCATTTAACGCCGACTTGAACCATTCTCCGAAGCTAAGTCCTGCCTCAAGCGAGTCTTCAATCGGAGCGTCTTCATCGCCCACTGCAAATTCACCTCGCGAAATCAATCGCGAACCATTGAATGTCGGCGAGAAAACGATGGCTGAAATACAACAAGAAAACGCTCGGCTGAGAAAGGAAATTGATGCCAAAGAAACGAAGTTAAATTCCAGTATGAGAAGCATTAAAATGTTTTGGAGTCCTGAATTGAAGAAAGAGAGATCTGCGAGAAAATCTGAAGAAGAAAAATACGCAAGATTAAGAGAGCAATTTAGTGTTGTGTCCGAAGAATCACAGCAAAGAGCAGAAACAATTCGAGATCTGCAAGAACGATTGCGGCAACAGCAAGATTCAACAGAACGTCTCTCAACTGGTCGGCCATCCCTCTCTTCCTCCAGTTCATTGTCTGGGCATTCACAAGATGGACTTCAGCGAGAGTTAGAAGTCTTAAGAGGAGAAAAAGATCGACAGGACAATGAAACATTTATACTTCAGAGATCGCTGGAGGAATTAAGTTCAAGGCTTGAAGCCCAGCAGCAGGCCATACAGGCCAAAGATGAAACAATAGCGCAGTTAATGGAAATGATACAAAGTAATAAAGGACTTGAATCTAAACAACTTGAGATGCATAAAGAGCAACATAGCACTGACAAAAAGAAGCTGGCAGAGGCTCTGAATCAACTAGCAAAACTACGAGAAGACATCGATGAAAGGGACAGGGCAATTGCATCCCTACAAGAGGAAATTGACCATGTTAAAATCAACAATGTTAATGACGAATTAAAACAATCTGCCAACCTGCTGGCCAAGGATAGCCATATAGCAGCATTGGAGACGCAAATTCAACAGCTCGAAGGAGAGATAGAAAATCTGAAAAAGACATCATCAGAAGATGACAAGAAGAGACTAGAGGACAGAAAACAAGCTGAGGTGTATGAGAGTCACTCAAAATTCATGAAATCCAAGATTGAATCACTTAAAGTGGATCTTGGTAAGAAAGATGCAGCTCTTGCAGCTGCAGATACCAAACTTGAAACTTTACAAGCTCATCAGGCAAATCAACAGGAACACATTGCTGTCCTTCAAACATCTCTATCAGCTAAGGAACACCACATCAAGAATCTACAGAGTGAGCTGGGATCTTTGCGCAGTCGACTAGATGAGAGAGAAGATCTTTTAAAACAGAAGGAGAAGAAACTACTCTCGGTATCTTCAGAACACTCCGAGAATTCATTCGCTGTGGAGAACCTACAGAGTGTACTTAGTACCAAAGAAAGGCAGATTACCAGTCTTAAACAAAAGTGTGAATGTCTTGAGAGAGATCTGCAAGAGAAAGATTCCTCCATTTCAACCATCAAAGCTCAACTGATTTCTCTAAAGGCTGAATATGCTGGCTCATCTAGTACCATCTCCAATCTGGAGGCGACAGTCCGAGACAAGGACAGACATATAGAGATGTTACAGGGTCGAAGGCAGCGTGATGGAGCTGAGAGTGAGGAGGAGGTCAACCGGGTCAAACGAGCTCATGACAAGCTGGAAGCAAGGGTGGCCTCTCTGTCCCTGTCTCTGAGAGAGCAACTTGCTGACAAAGATGAAGATATTGCTAGCCTAGAGCAACAGATTACGTCGTTGAAGACATCGTTACAAGACAAAACCGTTAAACTGGCTTCCTCTCAAGAAACAGTGAAACGGCTCGAGGAACAAATAGAACAGAAGAGTAGCAAGGAGGAACATGTGTCATCTGATCTGACAAGTAAAAGACTTGAAATCTCCAAGCTGGAAAAGGACATCAGAAAGCAACAAACAGAGCTTAGAAGCAAAGAGGGCGAGGTGAAGAAACTACAAGAAGAGCTGAAAGAACAGAATTGGAAACTCCAACAGATGGCAGATGATTGTGAAGTTAAAGATCATAAAATTGATGAGCTTGAAAAGCAGCTTAGAGAGCAGAGCAAGAAGTTGGTTGGTGTTAAGAGAAATCAACAACTAGAGAGAGAAAGACAAGCTCAGCTATTGAATGAAGTCAAGAAATCGGAGGATCAGAATGATGAGACAACCGAATATTTCCAGAGTGAGTTACAGAAAAAGGACGAGCGCATTGCAGTCTTGGAAGAAGCCCTCACTGAAAGCGTATCCATCGCCGCTGAACGGGAGGAACTGCTGGCTCAACAGGCTCATAACGCCGAGACAGCGACACATCGTGTGGAAGACATGGAGGCGGAAATTGAAAGAGTCCGCATAGAGACCGCTGTCACCAACACTAAGAACGCTTCCTTGGTCCTCGCCTTAAACGAAAACGATATTATCATGTCGTACTACAAGTCTGAAAGACACGGAATGATAGAACAGTTACTAGAAATGAGGCAAAACGCGCTACTTGCCACGATCTCTGAGAAAGACGCAAACATCGCTTTACTCGAGTTATCACCTACAGCTGGCAGTGACGCCGAGGTGCGAAAGTTCAAAGCAGAGAAAGACAAGCTTGTTAACGAGCTCAAAGAACAGACGCAGAAGCGAATGACGCTGCTATCAAACGAAGAAAACAAAGAAATTTCTCTCTCGTCGGAACTCTCGCAAGCTTCAACAGAAAAGATAACAGAGGCTGTAACGCTAATAGAGGACAGTATGGATAAACTACAACATTACGGAGAAGAACTGACGGAGATTTGTGACAAACACTTCCCCGATGTGAAGAAAAGAATTCCCAAGCTTAAACGGCGAGAAATTAATAGCATTGAGAAGCTAAAAAATGCCAGTCAAAAACAGTTGTTATCCGTGTTACAGACTTTGGAAAGCGACATGCAGGTCTTACAGGACAATGTGCACAAGCTACTAGAAGTGATCGAGGATTTCAGCTATACGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q811U3	ELKS/Rab6-interacting/CAST family member 1 OS=Rattus norvegicus OX=10116 GN=Erc1 PE=1 SV=1
Q99MI1	ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus OX=10090 GN=Erc1 PE=1 SV=1
O15083	ERC protein 2 OS=Homo sapiens OX=9606 GN=ERC2 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005204 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10174 all species →	Cast	RIM-binding protein of the cytomatrix active zone	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019323 all species →	Family	Active zone protein ELKS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18861 all species →	ELKS/RAB6-INTERACTING/CAST PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007274 all species →	Biological Process	neuromuscular synaptic transmission	Interproscan
GO:0048167 all species →	Biological Process	regulation of synaptic plasticity	Interproscan
GO:0048788 all species →	Cellular Component	cytoskeleton of presynaptic active zone	Interproscan
GO:0048790 all species →	Biological Process	maintenance of presynaptic active zone structure	Interproscan
GO:0098882 all species →	Molecular Function	structural constituent of presynaptic active zone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.117.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.