Gene detail

Detailed information of evm.model.Ap5.1200 in Astrangia poculata

Genomic Location: Ap5:13173586...13174278
NR annotation: XP_020616016.1, uncharacterized protein LOC110054028 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O83822	Translation initiation factor IF-3 OS=Treponema pallidum (strain Nichols) OX=243276 GN=infC PE=3 SV=1
B2S488	Translation initiation factor IF-3 OS=Treponema pallidum subsp. pallidum (strain SS14) OX=455434 GN=infC PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009556 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05198 all species →	IF3_N	Translation initiation factor IF-3, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036788 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), C-terminal domain superfamily	Interproscan
IPR019814 all species →	Domain	Translation initiation factor 3, N-terminal	Interproscan
IPR001288 all species →	Family	Translation initiation factor 3	Interproscan
IPR036787 all species →	Homologous_superfamily	Translation initiation factor 3 (IF-3), N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10938 all species →	TRANSLATION INITIATION FACTOR IF-3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006413 all species →	Biological Process	translational initiation	Interproscan
GO:0003743 all species →	Molecular Function	translation initiation factor activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0032790 all species →	Biological Process	ribosome disassembly	Interproscan
GO:0043022 all species →	Molecular Function	ribosome binding	Interproscan
GO:0070124 all species →	Biological Process	mitochondrial translational initiation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K02520	infC, MTIF3; translation initiation factor IF-3	-	Mitochondrial biogenesis	ko03029	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.