Genomic Location: Ap5:14324912...14331244
NR annotation: XP_020629462.1, interferon-related developmental regulator 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.1324 |
| Transcript |
| evm.model.Ap5.1324 |
| Protein |
| evm.model.Ap5.1324 |
| UniProt accession | Description |
|---|---|
| Q5S1U6 | Interferon-related developmental regulator 1 OS=Sus scrofa OX=9823 GN=IFRD1 PE=2 SV=1 |
| O00458 | Interferon-related developmental regulator 1 OS=Homo sapiens OX=9606 GN=IFRD1 PE=1 SV=4 |
| Q12894 | Interferon-related developmental regulator 2 OS=Homo sapiens OX=9606 GN=IFRD2 PE=1 SV=4 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007805 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF05004 all species → | IFRD | Interferon-related developmental regulator (IFRD) | Repeat | Interproscan |
| PF04836 all species → | IFRD_C | Interferon-related protein conserved region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR007701 all species → | Domain | Interferon-related developmental regulator, N-terminal | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR006921 all species → | Domain | Interferon-related developmental regulator, C-terminal | Interproscan |
| IPR039777 all species → | Family | Interferon-related developmental regulator | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12354 all species → | INTERFERON-RELATED DEVELOPMENTAL REGULATOR | Interproscan |
evm.model.Ap5.1324 in Astrangia poculata.evm.model.Ap5.1324.Transcript abundance of evm.model.Ap5.1324 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
