Detailed information of evm.model.Ap5.1329 in Astrangia poculata

Genomic Location: Ap5:14377816...14403543
NR annotation: XP_022806859.1, LOW QUALITY PROTEIN: dynein heavy chain 3, axonemal-like [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8TD57Dynein axonemal heavy chain 3 OS=Homo sapiens OX=9606 GN=DNAH3 PE=1 SV=1
Q8BW94Dynein axonemal heavy chain 3 OS=Mus musculus OX=10090 GN=Dnah3 PE=1 SV=2
Q63170Dynein axonemal heavy chain 7 OS=Rattus norvegicus OX=10116 GN=Dnah7 PE=2 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000142 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF12781
all species →
AAA_9ATP-binding dynein motor regionDomainInterproscan
PF18198
all species →
AAA_lid_11Dynein heavy chain AAA lid domainDomainInterproscan
PF12777
all species →
MTMicrotubule-binding stalk of dynein motorDomainInterproscan
PF18199
all species →
Dynein_CDynein heavy chain C-terminal domainDomainInterproscan
PF12780
all species →
AAA_8P-loop containing dynein motor region D4DomainInterproscan
PF03028
all species →
Dynein_heavyDynein heavy chain region D6 P-loop domain DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →
Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR035706
all species →
DomainDynein heavy chain, ATP-binding dynein motor regionInterproscan
IPR041658
all species →
DomainDynein heavy chain AAA lid domainInterproscan
IPR043160
all species →
Homologous_superfamilyDynein heavy chain, C-terminal domain, barrel regionInterproscan
IPR024743
all species →
DomainDynein heavy chain, coiled coil stalkInterproscan
IPR041228
all species →
DomainDynein heavy chain, C-terminal domainInterproscan
IPR026983
all species →
FamilyDynein heavy chainInterproscan
IPR024317
all species →
DomainDynein heavy chain, AAA module D4Interproscan
IPR004273
all species →
DomainDynein heavy chain region D6 P-loop domainInterproscan
IPR042219
all species →
Homologous_superfamilyDynein heavy chain AAA lid domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45703
all species →
DYNEIN HEAVY CHAINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0007018
all species →
Biological Processmicrotubule-based movementInterproscan
GO:0030286
all species →
Cellular Componentdynein complexInterproscan
GO:0045505
all species →
Molecular Functiondynein intermediate chain bindingInterproscan
GO:0051959
all species →
Molecular Functiondynein light intermediate chain bindingInterproscan
GO:0008569
all species →
Molecular Functionminus-end-directed microtubule motor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10408DNAH; dynein axonemal heavy chain-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap5.1329 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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