Genomic Location: Ap5:14935252...14937896
NR annotation: KAJ7392026.1, C-type lectin (CTL) or carbohydrate-recognition domain (CRD) [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.1366 |
| Transcript |
| evm.model.Ap5.1366 |
| Protein |
| evm.model.Ap5.1366 |
| UniProt accession | Description |
|---|---|
| P22897 | Macrophage mannose receptor 1 OS=Homo sapiens OX=9606 GN=MRC1 PE=1 SV=1 |
| Q6ZS10 | C-type lectin domain family 17, member A OS=Homo sapiens OX=9606 GN=CLEC17A PE=1 SV=2 |
| Q6A051 | Attractin-like protein 1 OS=Mus musculus OX=10090 GN=Atrnl1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000566 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR051004 all species → | Family | Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22802 all species → | C-TYPE LECTIN SUPERFAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009897 all species → | Cellular Component | external side of plasma membrane | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| GO:0044419 all species → | Biological Process | biological process involved in interspecies interaction between organisms | Interproscan |
evm.model.Ap5.1366.Transcript abundance of evm.model.Ap5.1366 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
