Gene detail

Detailed information of evm.model.Ap5.137_evm.model.Ap5.140 in Astrangia poculata

Genomic Location: Ap5:1723132...1743096
NR annotation: XP_020605318.1, calpain-15-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.137_evm.model.Ap5.140

atggatgaaatgggagtgaatttttcgacagagccagattggagttgccagaaatgtacgttgataaacccaggaagaaatcccacctgcctagcttgtggtcgccgtaaacaaactactgctacttggatctgtaaatcgtgtggctctcgtaatccacagacggtagttctttgcaataattgtggatcggacaagaaagaatcgcctcgaaattccgatcacaacggaaaacaatggacctgtccgcgatgtactttgtctaatccatggacagctaacgtctgttctgcctgccagttcgatccctcgctagttgtggcggatacgtcgacaagtgcgggaccctcgtcgaatcaaaggctctatcccgatttatcacttgaattggatccaggcattgcccagcaaagccctgaggttctaaagtgtccaaactgccagagtttgttgtacgataatgttggagtgaactgcacggtttgtcattcgccatgtccagaggaaggttttaaacctagaccatttcctgaatcatccattcctcatgtgtctaaagatgttgataccggaagttggagttgttctgggtgtactttcgataacaaagcctctaattcaatttgtgaagtttgcggaagtgctcgtgaagttggacctaaacccagcacttcgggagaagttactgattcatcaggttctgctgtagtggaccctggttggccttgcccaacttgtactcttgtcaattcatcgactgcaactgcatgtagtgcatgcgattcaaagaaagatggttcaacctctggagaatccactcagccatcaccatcagccagcccgagtaaaaggataaagcgccagaagagtatccctgcagagtctaggagaatgcgtgacgagaaacaggccaaagagcagtggatcaacattgtgcagtactgcaacagtcaaagaatcgagttcatagatgactcctttccacccactgaaaaatctctgtatcttgagccacgcttctctgaacaccctcgtgtagcagaatggcggcgcccacagcacatcaagtcatttggaggtgggcgtggtacagctgcaattccactggcagtgttccgcagtccaaggcctgatgacatcatgcaaggggttctgggtgactgttggtttttgagtgctatggctgtcttaggtgaaagacctgagctcctggaaaaaattgtgataacaagagagattaatccagagggagcttaccaagttcgactttgtaaagatggaaaatggacagttatcttggttgatgacttattaccttgcaatggctatgggcagccagcgtattcacaggctcgtcgacagcagctttgggtgccattaattgagaaggctatggcaaaacttcatggttgttaccaggctcttactgctggccgctgcatagaaggcctggctaccttgacaggagcaccatgtgagagttttatgctgcatgagcctcaaaaccccactagtgatacagagcctatagataaggacatgatctgggcacagcttctgagctgtagaagtgctgggtttctaatgggtgcttcttgtggtggagacactaaaccagaggaagaggctgtgtttgcagcagttggtctacaaacacaccatgcatactcagtgctggatgttaaggatgtacatggtattagacttgttcgtcttcgtaacccgtggggtcgtttttcgtggactggcgattggtctgatgcgtcccctctgtggacccctgagttgagatatgagctcatggcccatgggtctgaggaaggagtcttctggatgtcccttgaggatttcatgaagtactttgatagtgtggacgtgtgcaagatcagggaaggttgggctgaggctcgtgtcaatggttgttttccagcatttgcaggtcctccagctaaggttgctttggtgaatgtgttctctacaactgaagtcgacttttgccttttccaagagggagtcaggggaaaggctgaaggtgtaaaatctctccttgacctgtcaatcattgtgtgccgcacgtcctctggcacacttgctcccagacccctctcactcgtttgtcacagcagaagacaagtaaagtctgatgtttcatgtaacggtattctggaagaaggaacgtacatgataatttgttcagctttcaaccattggcagtcgttggaagcaagacatactgaagccgtaggagaagcattcgtcaaaggactcgtcgatgaagagctttttccaaactatgttctggcagtccacagctctcgtgcagtcatggtggagcaagttccaatgacagatttctgtttggctgacacgctgctgttattggctacaaaaaaaggaaagcgacatgagggaattcctggtgtcacgtgttactacatggcgcaaggaattgcgggattgattgttgtagcggaaaaccgccgacctgatcaccatttgctcgtggactgtaactgttcagagagctttaacgtggtgtcttctcgaggagtgctcatgacaactgactgtgttccgccccttcataagcaaatacttattcttttgacccagctggaaggaacagacggtttcgctgtgtctcataagctcagctttcgcatcttgcctgacaatggctacggagcatatggggctcatcacaatccacaactgacacccgaactgtacggactacacagtgcacggcctttatga

Transcript

evm.model.Ap5.137_evm.model.Ap5.140

ATGGATGAAATGGGAGTGAATTTTTCGACAGAGCCAGATTGGAGTTGCCAGAAATGTACGTTGATAAACCCAGGAAGAAATCCCACCTGCCTAGCTTGTGGTCGCCGTAAACAAACTACTGCTACTTGGATCTGTAAATCGTGTGGCTCTCGTAATCCACAGACGGTAGTTCTTTGCAATAATTGTGGATCGGACAAGAAAGAATCGCCTCGAAATTCCGATCACAACGGAAAACAATGGACCTGTCCGCGATGTACTTTGTCTAATCCATGGACAGCTAACGTCTGTTCTGCCTGCCAGTTCGATCCCTCGCTAGTTGTGGCGGATACGTCGACAAGTGCGGGACCCTCGTCGAATCAAAGGCTCTATCCCGATTTATCACTTGAATTGGATCCAGGCATTGCCCAGCAAAGCCCTGAGGTTCTAAAGTGTCCAAACTGCCAGAGTTTGTTGTACGATAATGTTGGAGTGAACTGCACGGTTTGTCATTCGCCATGTCCAGAGGAAGGTTTTAAACCTAGACCATTTCCTGAATCATCCATTCCTCATGTGTCTAAAGATGTTGATACCGGAAGTTGGAGTTGTTCTGGGTGTACTTTCGATAACAAAGCCTCTAATTCAATTTGTGAAGTTTGCGGAAGTGCTCGTGAAGTTGGACCTAAACCCAGCACTTCGGGAGAAGTTACTGATTCATCAGGTTCTGCTGTAGTGGACCCTGGTTGGCCTTGCCCAACTTGTACTCTTGTCAATTCATCGACTGCAACTGCATGTAGTGCATGCGATTCAAAGAAAGATGGTTCAACCTCTGGAGAATCCACTCAGCCATCACCATCAGCCAGCCCGAGTAAAAGGATAAAGCGCCAGAAGAGTATCCCTGCAGAGTCTAGGAGAATGCGTGACGAGAAACAGGCCAAAGAGCAGTGGATCAACATTGTGCAGTACTGCAACAGTCAAAGAATCGAGTTCATAGATGACTCCTTTCCACCCACTGAAAAATCTCTGTATCTTGAGCCACGCTTCTCTGAACACCCTCGTGTAGCAGAATGGCGGCGCCCACAGCACATCAAGTCATTTGGAGGTGGGCGTGGTACAGCTGCAATTCCACTGGCAGTGTTCCGCAGTCCAAGGCCTGATGACATCATGCAAGGGGTTCTGGGTGACTGTTGGTTTTTGAGTGCTATGGCTGTCTTAGGTGAAAGACCTGAGCTCCTGGAAAAAATTGTGATAACAAGAGAGATTAATCCAGAGGGAGCTTACCAAGTTCGACTTTGTAAAGATGGAAAATGGACAGTTATCTTGGTTGATGACTTATTACCTTGCAATGGCTATGGGCAGCCAGCGTATTCACAGGCTCGTCGACAGCAGCTTTGGGTGCCATTAATTGAGAAGGCTATGGCAAAACTTCATGGTTGTTACCAGGCTCTTACTGCTGGCCGCTGCATAGAAGGCCTGGCTACCTTGACAGGAGCACCATGTGAGAGTTTTATGCTGCATGAGCCTCAAAACCCCACTAGTGATACAGAGCCTATAGATAAGGACATGATCTGGGCACAGCTTCTGAGCTGTAGAAGTGCTGGGTTTCTAATGGGTGCTTCTTGTGGTGGAGACACTAAACCAGAGGAAGAGGCTGTGTTTGCAGCAGTTGGTCTACAAACACACCATGCATACTCAGTGCTGGATGTTAAGGATGTACATGGTATTAGACTTGTTCGTCTTCGTAACCCGTGGGGTCGTTTTTCGTGGACTGGCGATTGGTCTGATGCGTCCCCTCTGTGGACCCCTGAGTTGAGATATGAGCTCATGGCCCATGGGTCTGAGGAAGGAGTCTTCTGGATGTCCCTTGAGGATTTCATGAAGTACTTTGATAGTGTGGACGTGTGCAAGATCAGGGAAGGTTGGGCTGAGGCTCGTGTCAATGGTTGTTTTCCAGCATTTGCAGGTCCTCCAGCTAAGGTTGCTTTGGTGAATGTGTTCTCTACAACTGAAGTCGACTTTTGCCTTTTCCAAGAGGGAGTCAGGGGAAAGGCTGAAGGTGTAAAATCTCTCCTTGACCTGTCAATCATTGTGTGCCGCACGTCCTCTGGCACACTTGCTCCCAGACCCCTCTCACTCGTTTGTCACAGCAGAAGACAAGTAAAGTCTGATGTTTCATGTAACGGTATTCTGGAAGAAGGAACGTACATGATAATTTGTTCAGCTTTCAACCATTGGCAGTCGTTGGAAGCAAGACATACTGAAGCCGTAGGAGAAGCATTCGTCAAAGGACTCGTCGATGAAGAGCTTTTTCCAAACTATGTTCTGGCAGTCCACAGCTCTCGTGCAGTCATGGTGGAGCAAGTTCCAATGACAGATTTCTGTTTGGCTGACACGCTGCTGTTATTGGCTACAAAAAAAGGAAAGCGACATGAGGGAATTCCTGGTGTCACGTGTTACTACATGGCGCAAGGAATTGCGGGATTGATTGTTGTAGCGGAAAACCGCCGACCTGATCACCATTTGCTCGTGGACTGTAACTGTTCAGAGAGCTTTAACGTGGTGTCTTCTCGAGGAGTGCTCATGACAACTGACTGTGTTCCGCCCCTTCATAAGCAAATACTTATTCTTTTGACCCAGCTGGAAGGAACAGACGGTTTCGCTGTGTCTCATAAGCTCAGCTTTCGCATCTTGCCTGACAATGGCTACGGAGCATATGGGGCTCATCACAATCCACAACTGACACCCGAACTGTACGGACTACACAGTGCACGGCCTTTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JLG8	Calpain-15 OS=Mus musculus OX=10090 GN=Capn15 PE=1 SV=1
O75808	Calpain-15 OS=Homo sapiens OX=9606 GN=CAPN15 PE=1 SV=1
P27398	Calpain-D OS=Drosophila melanogaster OX=7227 GN=sol PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003858 (this species only)
Ubiquitin family	UBD\|ZnF\|NZF · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan
PF00641 all species →	zf-RanBP	Zn-finger in Ran binding protein and others	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036443 all species →	Homologous_superfamily	Zinc finger, RanBP2-type superfamily	Interproscan
IPR001876 all species →	Domain	Zinc finger, RanBP2-type	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR022684 all species →	Family	Peptidase C2, calpain family	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050420 all species →	Family	Calpain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10183 all species →	CALPAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08582	CAPN15; calpain-15	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.