Gene detail

Detailed information of evm.model.Ap5.1548 in Astrangia poculata

Genomic Location: Ap5:16454966...16463586
NR annotation: XP_020610407.1, lysosome membrane protein 2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q07969	Platelet glycoprotein 4 OS=Rattus norvegicus OX=10116 GN=Cd36 PE=1 SV=3
Q14108	Lysosome membrane protein 2 OS=Homo sapiens OX=9606 GN=SCARB2 PE=1 SV=2
Q8WTV0	Scavenger receptor class B member 1 OS=Homo sapiens OX=9606 GN=SCARB1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001028 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01130 all species →	CD36	CD36 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002159 all species →	Family	CD36 family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11923 all species →	SCAVENGER RECEPTOR CLASS B TYPE-1 SR-B1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005044 all species →	Molecular Function	scavenger receptor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12384	SCARB2, LIMP2, CD36L2; lysosome membrane protein 2	-	Lysosome	ko04142	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.