Genomic Location: Ap5:17038120...17079675
NR annotation: KAJ7392942.1, Phosphoacetylglucosamine Mutase [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap5.1615 |
| Transcript |
| evm.model.Ap5.1615 |
| Protein |
| evm.model.Ap5.1615 |
| UniProt accession | Description |
|---|---|
| Q8AV28 | Pericentriolar material 1 protein OS=Gallus gallus OX=9031 GN=PCM1 PE=2 SV=1 |
| Q15154 | Pericentriolar material 1 protein OS=Homo sapiens OX=9606 GN=PCM1 PE=1 SV=6 |
| Q9R0L6 | Pericentriolar material 1 protein OS=Mus musculus OX=10090 GN=Pcm1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002504 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF15717 all species → | PCM1_C | Pericentriolar material 1 C terminus | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR031446 all species → | Domain | Pericentriolar material 1 protein, C-terminal | Interproscan |
| IPR024138 all species → | Family | Pericentriolar material 1 protein | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14164 all species → | PERICENTRIOLAR MATERIAL 1-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| GO:0005814 all species → | Cellular Component | centriole | Interproscan |
| GO:0007098 all species → | Biological Process | centrosome cycle | Interproscan |
| GO:0034451 all species → | Cellular Component | centriolar satellite | Interproscan |
| GO:0034454 all species → | Biological Process | microtubule anchoring at centrosome | Interproscan |
| GO:0035735 all species → | Biological Process | intraciliary transport involved in cilium assembly | Interproscan |
| GO:0036064 all species → | Cellular Component | ciliary basal body | Interproscan |
| GO:0060271 all species → | Biological Process | cilium assembly | Interproscan |
| GO:0071539 all species → | Biological Process | protein localization to centrosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16537 | PCM1; pericentriolar material 1 protein | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of evm.model.Ap5.1615 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
