Gene detail

Detailed information of evm.model.Ap5.1693 in Astrangia poculata

Genomic Location: Ap5:17920987...17928672
NR annotation: CAH3046537.1, unnamed protein product, partial [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.1693

atgaaagcgtcgagctcccttgacggctttccagcaaaagacggtataataactgaagatgatgtcaccactgcttggtgtgcggatgataagaacgacgaacaatggctggaggttgacctgcaggaagacaaagatgttatggctgttgctttacaaggccgatacggacactcgtgggttaaaacgttttatattcagtacagtagtgacaagagcaagtggtactgctatgggtcggacaatggtcacaagctgtacactggaaaccagaacagtgaaacagtaaaaatatacgtcctccatatggattccatttttgcacgctatattcggattaaccctcgagcctggaacaatagtatttgtttgcgtactgaggtctatggatgcccacgtgacccagacaaagaatacgactctcgacgccctatgtaccaggcctgtggaatagaaccaccaacttcgccgccaacgaccacaccaccgcctcctactacttctgcggaagaaaaaaagccagatttgccaatttcgcaattcaatctacgtcttccgaatcgccccgtcaagacaggcgagttctttctcatcggcatcgaggcgcacgagggaacaaatgttgtatatcgatgggaacttgaagatgaagatttgaccaagacttcaaaggctttctggcaggtttacaatgatcctggagtttatgatgtgaaagtaacagcatccaacagaaacaacacggttcatagtagtggcactattgttgtgcaggacgaaattaaaggcctgaagtgtgtaaaaaacaccgctgcagttgttccgatggaggaaatagtaattgaatggataatttctaaagggaccaacgtcacatttacaatttctactggcgatggaggtactgaacagattttgaagacgtttaccgacggctttgctcaaaattcattacgtcatcagtacgagagtgtgggtaactacgatgtctccattagcgctataaacgacgtcgaagcaagtggaaaacgtgcaaaatgtaccgtttttgtagaggatccgatcgctgatttgtcctttcgaataccaccaccgcgcattaaaaatggttctcaagatatgtatattgccgttggtgagagcattacagttgagggaagtattgctagtggcacaagtgtcttctgcgactttgattttggcgaaaacgttgtacatggaggtgttgatatatttactcaaagttatacttatcggaaacccggatactatacggtcagtctcagctgcaaaaaccgtcttagtaacatgtacaaaaatcattctaaaaggattgtggttcaagaggatgaaccaatgactaatcttcaggtattggtcgatgtcacaagcaaagggaaagactctgtgtttacactcgcgatgactgcgggaacagcttttgtctgcgattggtcacttggggataacaccgcttttcagacagatgtaacagatattaatatacctgtgcttcataagtacgccaaggaaggggcttatgataccagtgttcgttgtgaaaatcagcacggtcttgtagtagcccaaagcgttgcatgggtacagatacctatcgttgatttaacatgcgattcgttgcaacagtacattgttacgtcggaagatgcttcttttaatatttctgttaaatctggctcgcatgtcacagtcgcggtaaagtttgaagatagtcaaacacagacggttcccttgagtgagggctttgttgactggaaatctttcactctaaaacattcgtacatgtcaaacggttcctttgtggtaactgtaaatgcatcaaatcttctgggtaaactcagcacaacctgtcgaccgatcgtggttgtacagaaccctctacttaatataaccctgagcgctaacaggacaataatgaaagtatcggagtatgttgcgtttagtctcagaatctcggtgtcgagtaattccttgcccaccgatgcatcttgttcttggacgtttggcgataattcatcagtaaacggcagaccgttgatattcaagcatggagaaaccgtcatattacatcgctacttatctccagggaaattcttaacctatgtttcctgtgcaaatgaagtgagtagaattgcgctcaacacaactgtcacagttctgaaattagtcaagccatacatgaaagcgtgcctttattgcaatcattcgagtgacattacagagatcccagacaggaaatatttcactctcggcgattcactctcatttgtgacaacttttcaagattttgacagggcctatcattggaaaatgacaggatacggggatcttgcaattaccaaagagccttttaccagtgtgattttaactaaaactggaccttttattacaaatgttgtagtagataaggtcgttgaaaatatgtcagcatcagttgaattaattgtccaagagacaattcacggtgtggcattctcgtcaagtggtttaacgtggctaaggactgccactcattttgaactcgccgtaccaaaatttgattatgggagctgttttgtcgctgcactgaacgactcgtcacagtcgcatatatcacactgctcaacaaatagcacaaaaaattatatgttttctttcagtcacatttatctttttgagggcaattattcagtttgcctcagtgtattcaacaaagtgtcagaggaaaaacgttgtttggtcgttgaagtctctaagcccgtttgcaagattggaaatgtatcaatattggaatctgacgtgaaagagatagacgtagggcaaactttaaaatacaacaaatctgaacagtttcagcttatagggcgttataccaacaagtgcgcacttcgaacatcaaaggatgtaaagttgttgtggattgtaaagaaattaacccctgaaaacgatgaaatcggcattaatagagaggccgaaattgtgagaaaaggtacaggttcgttgattacggtcaaagcgcgctctttgtcatacggtgaacatcattttgtcttcattgtggaactcacaagtccagacgtattaaccctctatggacatgtgataggaaacgcgacagtaaaagttgagattgttcgctcaccccttattggcagcatagcaggggaaagaaagcaacatgtacacaaggaagacactattacgatagatgcttcatttcatgaccctgatctaccgccaggggaagatcaagaaggcctggaattcacttggtactgtaggacgcaacatttcgcccattgctacgacaaccaactcagccctgataactttataaaaattcttaattctccagtttttaccacgagccttgacagatatgttgcaaacaaaacttacatatttaaggtgaaagtgaataaagaaggccgcgctacattgacggacgaggtagaagtatttgttttgcctccaccgccaccgccgccaccaactccaccaccgccacctgaaatggatataaggtaa

Transcript

evm.model.Ap5.1693

ATGAAAGCGTCGAGCTCCCTTGACGGCTTTCCAGCAAAAGACGGTATAATAACTGAAGATGATGTCACCACTGCTTGGTGTGCGGATGATAAGAACGACGAACAATGGCTGGAGGTTGACCTGCAGGAAGACAAAGATGTTATGGCTGTTGCTTTACAAGGCCGATACGGACACTCGTGGGTTAAAACGTTTTATATTCAGTACAGTAGTGACAAGAGCAAGTGGTACTGCTATGGGTCGGACAATGGTCACAAGCTGTACACTGGAAACCAGAACAGTGAAACAGTAAAAATATACGTCCTCCATATGGATTCCATTTTTGCACGCTATATTCGGATTAACCCTCGAGCCTGGAACAATAGTATTTGTTTGCGTACTGAGGTCTATGGATGCCCACGTGACCCAGACAAAGAATACGACTCTCGACGCCCTATGTACCAGGCCTGTGGAATAGAACCACCAACTTCGCCGCCAACGACCACACCACCGCCTCCTACTACTTCTGCGGAAGAAAAAAAGCCAGATTTGCCAATTTCGCAATTCAATCTACGTCTTCCGAATCGCCCCGTCAAGACAGGCGAGTTCTTTCTCATCGGCATCGAGGCGCACGAGGGAACAAATGTTGTATATCGATGGGAACTTGAAGATGAAGATTTGACCAAGACTTCAAAGGCTTTCTGGCAGGTTTACAATGATCCTGGAGTTTATGATGTGAAAGTAACAGCATCCAACAGAAACAACACGGTTCATAGTAGTGGCACTATTGTTGTGCAGGACGAAATTAAAGGCCTGAAGTGTGTAAAAAACACCGCTGCAGTTGTTCCGATGGAGGAAATAGTAATTGAATGGATAATTTCTAAAGGGACCAACGTCACATTTACAATTTCTACTGGCGATGGAGGTACTGAACAGATTTTGAAGACGTTTACCGACGGCTTTGCTCAAAATTCATTACGTCATCAGTACGAGAGTGTGGGTAACTACGATGTCTCCATTAGCGCTATAAACGACGTCGAAGCAAGTGGAAAACGTGCAAAATGTACCGTTTTTGTAGAGGATCCGATCGCTGATTTGTCCTTTCGAATACCACCACCGCGCATTAAAAATGGTTCTCAAGATATGTATATTGCCGTTGGTGAGAGCATTACAGTTGAGGGAAGTATTGCTAGTGGCACAAGTGTCTTCTGCGACTTTGATTTTGGCGAAAACGTTGTACATGGAGGTGTTGATATATTTACTCAAAGTTATACTTATCGGAAACCCGGATACTATACGGTCAGTCTCAGCTGCAAAAACCGTCTTAGTAACATGTACAAAAATCATTCTAAAAGGATTGTGGTTCAAGAGGATGAACCAATGACTAATCTTCAGGTATTGGTCGATGTCACAAGCAAAGGGAAAGACTCTGTGTTTACACTCGCGATGACTGCGGGAACAGCTTTTGTCTGCGATTGGTCACTTGGGGATAACACCGCTTTTCAGACAGATGTAACAGATATTAATATACCTGTGCTTCATAAGTACGCCAAGGAAGGGGCTTATGATACCAGTGTTCGTTGTGAAAATCAGCACGGTCTTGTAGTAGCCCAAAGCGTTGCATGGGTACAGATACCTATCGTTGATTTAACATGCGATTCGTTGCAACAGTACATTGTTACGTCGGAAGATGCTTCTTTTAATATTTCTGTTAAATCTGGCTCGCATGTCACAGTCGCGGTAAAGTTTGAAGATAGTCAAACACAGACGGTTCCCTTGAGTGAGGGCTTTGTTGACTGGAAATCTTTCACTCTAAAACATTCGTACATGTCAAACGGTTCCTTTGTGGTAACTGTAAATGCATCAAATCTTCTGGGTAAACTCAGCACAACCTGTCGACCGATCGTGGTTGTACAGAACCCTCTACTTAATATAACCCTGAGCGCTAACAGGACAATAATGAAAGTATCGGAGTATGTTGCGTTTAGTCTCAGAATCTCGGTGTCGAGTAATTCCTTGCCCACCGATGCATCTTGTTCTTGGACGTTTGGCGATAATTCATCAGTAAACGGCAGACCGTTGATATTCAAGCATGGAGAAACCGTCATATTACATCGCTACTTATCTCCAGGGAAATTCTTAACCTATGTTTCCTGTGCAAATGAAGTGAGTAGAATTGCGCTCAACACAACTGTCACAGTTCTGAAATTAGTCAAGCCATACATGAAAGCGTGCCTTTATTGCAATCATTCGAGTGACATTACAGAGATCCCAGACAGGAAATATTTCACTCTCGGCGATTCACTCTCATTTGTGACAACTTTTCAAGATTTTGACAGGGCCTATCATTGGAAAATGACAGGATACGGGGATCTTGCAATTACCAAAGAGCCTTTTACCAGTGTGATTTTAACTAAAACTGGACCTTTTATTACAAATGTTGTAGTAGATAAGGTCGTTGAAAATATGTCAGCATCAGTTGAATTAATTGTCCAAGAGACAATTCACGGTGTGGCATTCTCGTCAAGTGGTTTAACGTGGCTAAGGACTGCCACTCATTTTGAACTCGCCGTACCAAAATTTGATTATGGGAGCTGTTTTGTCGCTGCACTGAACGACTCGTCACAGTCGCATATATCACACTGCTCAACAAATAGCACAAAAAATTATATGTTTTCTTTCAGTCACATTTATCTTTTTGAGGGCAATTATTCAGTTTGCCTCAGTGTATTCAACAAAGTGTCAGAGGAAAAACGTTGTTTGGTCGTTGAAGTCTCTAAGCCCGTTTGCAAGATTGGAAATGTATCAATATTGGAATCTGACGTGAAAGAGATAGACGTAGGGCAAACTTTAAAATACAACAAATCTGAACAGTTTCAGCTTATAGGGCGTTATACCAACAAGTGCGCACTTCGAACATCAAAGGATGTAAAGTTGTTGTGGATTGTAAAGAAATTAACCCCTGAAAACGATGAAATCGGCATTAATAGAGAGGCCGAAATTGTGAGAAAAGGTACAGGTTCGTTGATTACGGTCAAAGCGCGCTCTTTGTCATACGGTGAACATCATTTTGTCTTCATTGTGGAACTCACAAGTCCAGACGTATTAACCCTCTATGGACATGTGATAGGAAACGCGACAGTAAAAGTTGAGATTGTTCGCTCACCCCTTATTGGCAGCATAGCAGGGGAAAGAAAGCAACATGTACACAAGGAAGACACTATTACGATAGATGCTTCATTTCATGACCCTGATCTACCGCCAGGGGAAGATCAAGAAGGCCTGGAATTCACTTGGTACTGTAGGACGCAACATTTCGCCCATTGCTACGACAACCAACTCAGCCCTGATAACTTTATAAAAATTCTTAATTCTCCAGTTTTTACCACGAGCCTTGACAGATATGTTGCAAACAAAACTTACATATTTAAGGTGAAAGTGAATAAAGAAGGCCGCGCTACATTGACGGACGAGGTAGAAGTATTTGTTTTGCCTCCACCGCCACCGCCGCCACCAACTCCACCACCGCCACCTGAAATGGATATAAGGTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000040 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00801 all species →	PKD	PKD domain	Domain	Interproscan
PF02010 all species →	REJ	REJ domain	Family	Interproscan
PF00754 all species →	F5_F8_type_C	F5/8 type C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000601 all species →	Domain	PKD domain	Interproscan
IPR035986 all species →	Homologous_superfamily	PKD domain superfamily	Interproscan
IPR008979 all species →	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR000421 all species →	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR022409 all species →	Domain	PKD/Chitinase domain	Interproscan
IPR002859 all species →	Domain	PKD/REJ-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46730 all species →	POLYCYSTIN-1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005261 all species →	Molecular Function	monoatomic cation channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006816 all species →	Biological Process	calcium ion transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.1693.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.