Gene detail

Detailed information of evm.model.Ap5.1898 in Astrangia poculata

Genomic Location: Ap5:20218745...20222254
NR annotation: XP_020624562.1, mortality factor 4-like protein 1 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6AYU1	Mortality factor 4-like protein 1 OS=Rattus norvegicus OX=10116 GN=Morf4l1 PE=2 SV=1
Q5NVP9	Mortality factor 4-like protein 1 OS=Pongo abelii OX=9601 GN=MORF4L1 PE=2 SV=1
Q9UBU8	Mortality factor 4-like protein 1 OS=Homo sapiens OX=9606 GN=MORF4L1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002047 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05712 all species →	MRG	MRG	Family	Interproscan
PF11717 all species →	Tudor-knot	RNA binding activity-knot of a chromodomain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026541 all species →	Domain	MRG domain	Interproscan
IPR025995 all species →	Domain	RNA binding activity-knot of a chromodomain	Interproscan
IPR038217 all species →	Homologous_superfamily	MRG, C-terminal domain superfamily	Interproscan
IPR008676 all species →	Family	MRG	Interproscan
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10880 all species →	MORTALITY FACTOR 4-LIKE PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006325 all species →	Biological Process	chromatin organization	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000123 all species →	Cellular Component	histone acetyltransferase complex	Interproscan
GO:0016573 all species →	Biological Process	obsolete histone acetylation	Interproscan
GO:0035267 all species →	Cellular Component	NuA4 histone acetyltransferase complex	Interproscan
GO:0043967 all species →	Biological Process	obsolete histone H4 acetylation	Interproscan
GO:0043968 all species →	Biological Process	obsolete histone H2A acetylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11339	MORF4L1, MRG15, EAF3; mortality factor 4-like protein 1	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.