Detailed information of evm.model.Ap5.203 in Astrangia poculata

Genomic Location: Ap5:2279741...2287073
NR annotation: XP_020609892.1, high mobility group protein B3-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q42344High mobility group B protein 4 OS=Arabidopsis thaliana OX=3702 GN=HMGB4 PE=1 SV=1
Q9SUP7High mobility group B protein 6 OS=Arabidopsis thaliana OX=3702 GN=HMGB6 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002244 (this species only)
Transcription factor familyHMG · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09011
all species →		HMG_box_2HMG-box domainDomainInterproscan
PF00505
all species →		HMG_boxHMG (high mobility group) boxDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR009071
all species →		DomainHigh mobility group box domainInterproscan
IPR036910
all species →		Homologous_superfamilyHigh mobility group box domain superfamilyInterproscan
IPR050342
all species →		FamilyHigh Mobility Group Box (HMGB)Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR48112
all species →		HIGH MOBILITY GROUP PROTEIN DSP1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0008301
all species →		Molecular FunctionDNA binding, bendingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap5.203.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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