Gene detail

Detailed information of evm.model.Ap5.2041 in Astrangia poculata

Genomic Location: Ap5:21564628...21568958
NR annotation: RMX37703.1, hypothetical protein pdam_00004330 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q13123	Protein Red OS=Homo sapiens OX=9606 GN=IK PE=1 SV=3
Q9Z1M8	Protein Red OS=Mus musculus OX=10090 GN=Ik PE=1 SV=2
Q5NVI3	Protein Red OS=Pongo abelii OX=9601 GN=IK PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005282 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07807 all species →	RED_C	RED-like protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012492 all species →	Domain	Protein RED, C-terminal	Interproscan
IPR039896 all species →	Family	Protein Red-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12765 all species →	RED PROTEIN IK FACTOR CYTOKINE IK	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000398 all species →	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2041.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.