Gene detail

Detailed information of evm.model.Ap5.2067 in Astrangia poculata

Genomic Location: Ap5:21770753...21785680
NR annotation: KAJ7323097.1, hypothetical protein OS493_032668 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2067

atgcccaagaaaaagacatgcgaagtgcctcttcctttgggctgggaagaggcgagagacttcgatggaagagtctactacatcgaccacaacacgaagcgaacgtcttgggtagacccgcgagatcggttaacaaagccaatgacattcgctgattgtgttggaaatgaattaccatatggctgggaagagcttaatgataaagttcttggaagatacttcattgaccacaacactggagcacaacaagcagaagatcctagaatacaatggcggaagaaaagggagactatgctttgtgattatttgtcagttgcgcagtccgacttattggctaagcaaaacatgctggatgttaagaagcagaggctacatgttgcacgcgaagaggttcagttttggacatcggagctcgaaaaaatgcagaaacgacatgagggacaatcaaagcatgtaaagcaaggcagcttaagctcttcctcatcaaattcaacagtcagttcaattgccagcaagtatgatgtgaatcaactcaagaaggagatatctcaagccaagtctagggttgaagaactcaaaacggaaatggatgttgtttcgggtgaagttcaagcacaagagaaagactatgaaaagctaaaaaaagtcgacagaaaactgtcttcccatcgtggctgtaaaaaggaagatgtgcaaggtttagttgaggagatacaaagtatacagagaacaaacaatgctaaagaacaagagaaaaatgatcttatacaagcattgctgagactcaaggataggctatcacagtcggattcttcacaagagattagagacgattccacaggagttgaaacaagcattgaatcccagactgatctcggttcagacccagccattgaacaactccctagaagggacaaacaagaattgaaagcagaattcaaaaaagctcggaaaaacgaatcggagctacaaagtgcgatcacacgcgtagacgagaaaattacccaggtcatgacagacgataataattccagacccatgttgctgcaagaaaaagaaactcttctcgacgaaattcgacggctgaattctcttgtaagaagcgaaggagaaaagcaaaagctcgaagttgaaaaagacaaactagcagctgatcttgactcggcgcgagaactttctaaccgagttatggctgacagaatccagctccaggcggagaagtcgatgttggttcatcagcttgctgaacaaaccaaattgacgagccttttgaatgtgcagttgagaaatgtctccggaagcaccccttcggtgtcgtcttgttcaagccgcggctccctctctttatccggaagccgaggatctttagcctcgagccgaggctccctcaactcgctcaactaccctgacctgaatcacagtggaggaagcgacgcgctcaacctccgtgagctgcatcaacgcgtgacagacatgctttcaggaatgtcgcgtgacacctcgtgtctaccgatctacgaagtgcggacgacaggcgcggctacaagttacacgcctacttccggtcgagcgaatcaccccagcgccagcaactcgtcgcaagtgtcgctgtcgtcacgtgactcgatttcctcgtcgcactcgcctccgatctcgccgagtacttccgatcgttctccgacgcactcgccggccactgctcgtatcgtggctaccgagggagagagtacggcttgtctcgatgggacggaaatggataggagctctttacctcaggctgaagggattcctgttcaacaaagacttagactattaaccgcagattcgaaatcaaacgaatctatcaacgccattccgttcatccctatgtctcccatcacggagggaatcccggcgcttcctcttagacgctgcgaagtccacttacccccgactggaacacgacccgtcaccgccgcaccctcggacgaatctgtggcggcggacagcggagtgttcgacgcgtcccaagagaacctaaaagcagctcaaagaggcgactacgactacgataactcagagacttcgcagatcaaaattggacttaattatgatactgatcgcgaagctctggttgtttgtattgatcaagcgaaaggtctaaaggctcttggtaacacggcgcagtgtaaggcggtgctcgcgaaagctgtgctgctaccgagtacgcccagtgaaagctgtgtgttggaaacgaaaccttgcgattatcaagacagccctgtgttcggagagcagtttcacattccggttcccgagagcaagctgaccagcaaaactctgcaggtgaacctccttatcgtcaacaactatgacacggaagagcttttgggtggtgcacaaatcagtcttgcggatttcaacgttcagactccagtgcgatttcgatggtacaacctcttgagttgtgcgttcttccagtcagcggctgccaagtatcaacatggcaaaagcagtacaactgcgccgtcgattggctcgatggacagcgtcctcgagccgaagggccgaggcaatttacgaccaagctcatggtgcgagggctcaacatttagcttggaatcagcggttgcaggattcgagcgcatgccctgtagatcagttagtcaagaggtactcaaccaggaggtggaaggtttacctgtccgcaaacacaccgctggaaggccggtagaaagagcgcagtctcaaggcgacagtgtgatcagcggtggctctcttcaggacagagatagtgactttgatcgatcgcctatagctcgacccagacctccaatggtgaagacgaagtattcgcggaagttttccgacccgcaacctctgggatcgttcccagtccacggtgtagacgacgaacttcctatgatgtcattgagccgtttgttctacgacatcaatctcaatcgcagtaactcggactgtaccactcgaaaaactgaaggcagtccattcgtacgaatgtcagtggagagaacaagcatgagaaggaaaaagcgcccaatgtcatggcaagggattcagcaataccagcagcttataccccacctagaagaaggacacgatcgggcagctatggatctcgaatttcatctcgaagcctccaaagcaaaacagttgcaggtaaacgatgacattcgaaagttatctcagctaaagaaacaaatcgaggaggccattgaagaaggatccactgagattcccaagtggctcgtggatagcgatgagtttcaaactctgctgagagatgtagagggttttagaagtctgaacattcatggtcatcgaagaagcccttactcgagaaaaagccacaagtcgttaagtttaagggaaaggcctcatcatcttcctccgaaacaagtcaagtcgcctgtaaatcccagtgttagtgaaacacactgggtatga

Transcript

evm.model.Ap5.2067

GGAGGCCTTGGCGATGCCCAAGAAAAAGACATGCGAAGTGCCTCTTCCTTTGGGCTGGGAAGAGGCGAGAGACTTCGATGGAAGAGTCTACTACATCGACCACAACACGAAGCGAACGTCTTGGGTAGACCCGCGAGATCGGTTAACAAAGCCAATGACATTCGCTGATTGTGTTGGAAATGAATTACCATATGGCTGGGAAGAGCTTAATGATAAAGTTCTTGGAAGATACTTCATTGACCACAACACTGGAGCACAACAAGCAGAAGATCCTAGAATACAATGGCGGAAGAAAAGGGAGACTATGCTTTGTGATTATTTGTCAGTTGCGCAGTCCGACTTATTGGCTAAGCAAAACATGCTGGATGTTAAGAAGCAGAGGCTACATGTTGCACGCGAAGAGGTTCAGTTTTGGACATCGGAGCTCGAAAAAATGCAGAAACGACATGAGGGACAATCAAAGCATGTAAAGCAAGGCAGCTTAAGCTCTTCCTCATCAAATTCAACAGTCAGTTCAATTGCCAGCAAGTATGATGTGAATCAACTCAAGAAGGAGATATCTCAAGCCAAGTCTAGGGTTGAAGAACTCAAAACGGAAATGGATGTTGTTTCGGGTGAAGTTCAAGCACAAGAGAAAGACTATGAAAAGCTAAAAAAAGTCGACAGAAAACTGTCTTCCCATCGTGGCTGTAAAAAGGAAGATGTGCAAGGTTTAGTTGAGGAGATACAAAGTATACAGAGAACAAACAATGCTAAAGAACAAGAGAAAAATGATCTTATACAAGCATTGCTGAGACTCAAGGATAGGCTATCACAGTCGGATTCTTCACAAGAGATTAGAGACGATTCCACAGGAGTTGAAACAAGCATTGAATCCCAGACTGATCTCGGTTCAGACCCAGCCATTGAACAACTCCCTAGAAGGGACAAACAAGAATTGAAAGCAGAATTCAAAAAAGCTCGGAAAAACGAATCGGAGCTACAAAGTGCGATCACACGCGTAGACGAGAAAATTACCCAGGTCATGACAGACGATAATAATTCCAGACCCATGTTGCTGCAAGAAAAAGAAACTCTTCTCGACGAAATTCGACGGCTGAATTCTCTTGTAAGAAGCGAAGGAGAAAAGCAAAAGCTCGAAGTTGAAAAAGACAAACTAGCAGCTGATCTTGACTCGGCGCGAGAACTTTCTAACCGAGTTATGGCTGACAGAATCCAGCTCCAGGCGGAGAAGTCGATGTTGGTTCATCAGCTTGCTGAACAAACCAAATTGACGAGCCTTTTGAATGTGCAGTTGAGAAATGTCTCCGGAAGCACCCCTTCGGTGTCGTCTTGTTCAAGCCGCGGCTCCCTCTCTTTATCCGGAAGCCGAGGATCTTTAGCCTCGAGCCGAGGCTCCCTCAACTCGCTCAACTACCCTGACCTGAATCACAGTGGAGGAAGCGACGCGCTCAACCTCCGTGAGCTGCATCAACGCGTGACAGACATGCTTTCAGGAATGTCGCGTGACACCTCGTGTCTACCGATCTACGAAGTGCGGACGACAGGCGCGGCTACAAGTTACACGCCTACTTCCGGTCGAGCGAATCACCCCAGCGCCAGCAACTCGTCGCAAGTGTCGCTGTCGTCACGTGACTCGATTTCCTCGTCGCACTCGCCTCCGATCTCGCCGAGTACTTCCGATCGTTCTCCGACGCACTCGCCGGCCACTGCTCGTATCGTGGCTACCGAGGGAGAGAGTACGGCTTGTCTCGATGGGACGGAAATGGATAGGAGCTCTTTACCTCAGGCTGAAGGGATTCCTGTTCAACAAAGACTTAGACTATTAACCGCAGATTCGAAATCAAACGAATCTATCAACGCCATTCCGTTCATCCCTATGTCTCCCATCACGGAGGGAATCCCGGCGCTTCCTCTTAGACGCTGCGAAGTCCACTTACCCCCGACTGGAACACGACCCGTCACCGCCGCACCCTCGGACGAATCTGTGGCGGCGGACAGCGGAGTGTTCGACGCGTCCCAAGAGAACCTAAAAGCAGCTCAAAGAGGCGACTACGACTACGATAACTCAGAGACTTCGCAGATCAAAATTGGACTTAATTATGATACTGATCGCGAAGCTCTGGTTGTTTGTATTGATCAAGCGAAAGGTCTAAAGGCTCTTGGTAACACGGCGCAGTGTAAGGCGGTGCTCGCGAAAGCTGTGCTGCTACCGAGTACGCCCAGTGAAAGCTGTGTGTTGGAAACGAAACCTTGCGATTATCAAGACAGCCCTGTGTTCGGAGAGCAGTTTCACATTCCGGTTCCCGAGAGCAAGCTGACCAGCAAAACTCTGCAGGTGAACCTCCTTATCGTCAACAACTATGACACGGAAGAGCTTTTGGGTGGTGCACAAATCAGTCTTGCGGATTTCAACGTTCAGACTCCAGTGCGATTTCGATGGTACAACCTCTTGAGTTGTGCGTTCTTCCAGTCAGCGGCTGCCAAGTATCAACATGGCAAAAGCAGTACAACTGCGCCGTCGATTGGCTCGATGGACAGCGTCCTCGAGCCGAAGGGCCGAGGCAATTTACGACCAAGCTCATGGTGCGAGGGCTCAACATTTAGCTTGGAATCAGCGGTTGCAGGATTCGAGCGCATGCCCTGTAGATCAGTTAGTCAAGAGGTACTCAACCAGGAGGTGGAAGGTTTACCTGTCCGCAAACACACCGCTGGAAGGCCGGTAGAAAGAGCGCAGTCTCAAGGCGACAGTGTGATCAGCGGTGGCTCTCTTCAGGACAGAGATAGTGACTTTGATCGATCGCCTATAGCTCGACCCAGACCTCCAATGGTGAAGACGAAGTATTCGCGGAAGTTTTCCGACCCGCAACCTCTGGGATCGTTCCCAGTCCACGGTGTAGACGACGAACTTCCTATGATGTCATTGAGCCGTTTGTTCTACGACATCAATCTCAATCGCAGTAACTCGGACTGTACCACTCGAAAAACTGAAGGCAGTCCATTCGTACGAATGTCAGTGGAGAGAACAAGCATGAGAAGGAAAAAGCGCCCAATGTCATGGCAAGGGATTCAGCAATACCAGCAGCTTATACCCCACCTAGAAGAAGGACACGATCGGGCAGCTATGGATCTCGAATTTCATCTCGAAGCCTCCAAAGCAAAACAGTTGCAGGTAAACGATGACATTCGAAAGTTATCTCAGCTAAAGAAACAAATCGAGGAGGCCATTGAAGAAGGATCCACTGAGATTCCCAAGTGGCTCGTGGATAGCGATGAGTTTCAAACTCTGCTGAGAGATGTAGAGGGTTTTAGAAGTCTGAACATTCATGGTCATCGAAGAAGCCCTTACTCGAGAAAAAGCCACAAGTCGTTAAGTTTAAGGGAAAGGCCTCATCATCTTCCTCCGAAACAAGTCAAGTCGCCTGTAAATCCCAGTGTTAGTGAAACACACTGGGTATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5SXA9	Protein KIBRA OS=Mus musculus OX=10090 GN=Wwc1 PE=1 SV=1
Q8IX03	Protein KIBRA OS=Homo sapiens OX=9606 GN=WWC1 PE=1 SV=1
Q6DJR2	Protein WWC2 OS=Xenopus tropicalis OX=8364 GN=wwc2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF00397 all species →	WW	WW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001202 all species →	Domain	WW domain	Interproscan
IPR037771 all species →	Domain	WWC, C2 domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR051105 all species →	Family	WWC/KIBRA Hippo Pathway Regulators	Interproscan
IPR036020 all species →	Homologous_superfamily	WW domain superfamily	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14791 all species →	BOMB/KIRA PROTEINS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0019900 all species →	Molecular Function	kinase binding	Interproscan
GO:0035330 all species →	Biological Process	regulation of hippo signaling	Interproscan
GO:0046621 all species →	Biological Process	negative regulation of organ growth	Interproscan
GO:0060090 all species →	Molecular Function	molecular adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K16685	WWC1; protein KIBRA	-	Hippo signaling pathway - multiple species	ko04392	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap5.2067 across 49 RNA-seq samples of Astrangia poculata. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples

4TPM > 0

4Conditions

3,572.9Max TPM

171.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
whole organism · cold control	14	0	0.00	0.00
whole organism · heat control	12	0	0.00	0.00
whole organism · cold challenge	12	4	699.34	3,572.90
whole organism · heat challenge	11	0	0.00	0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR10674714	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674715	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674724	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674733	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674734	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674735	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674736	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674737	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674739	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674743	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674746	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674747	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674748	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674750	whole organism · cold control	whole organism	not recorded	cold control	SRP237293	0.00
SRR10674706	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674707	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674708	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674717	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674718	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674720	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674721	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674725	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674731	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674741	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674752	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674753	whole organism · heat control	whole organism	not recorded	heat control	SRP237293	0.00
SRR10674744	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	3,572.90
SRR10674730	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	2,109.22
SRR10674749	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,394.36
SRR10674740	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	1,315.64
SRR10674711	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674712	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674713	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674722	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674723	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674732	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674738	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674745	whole organism · cold challenge	whole organism	not recorded	cold challenge	SRP237293	0.00
SRR10674709	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674710	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674716	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674719	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674726	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674727	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674728	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674729	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674742	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674751	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00
SRR10674754	whole organism · heat challenge	whole organism	not recorded	heat challenge	SRP237293	0.00

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.