Gene detail

Detailed information of evm.model.Ap5.2105 in Astrangia poculata

Genomic Location: Ap5:22030478...22039389
NR annotation: KAJ7385205.1, GPI-anchor transamidase subunit gab1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap5.2105

atggcggatgaagatgttttgatttcaggataccttcgaaaatcgcctccagaaacgaaattcaaagtcagcacgtggcagagacgttactttgttttgcatgcaaacaaaaagctacattattacaagaatgacaaggagaagcgtcctgtgaaagatccaataaacttggcattttgcaagtctgttgagtcgcatttggatcactataaattcaagcatgttttcagtattgtcactgagcagcggacatattatcttgtggcagagtcaccaggagatatggagaattgggtggaaaaactttgtgatgtgtgtggctttagaagaacagacggcagaacctcaccagatttgaacggaactcaaaaaactgtatatcaaacttctccagctaattctcgcccaattgcagctgccaaacatcgcacaatgagccctgttggatctcagtctagtgtttcgtcatcaggttcaagtgtcacgtcaccaactagcccttgtccgctttccattcctaaacacatcatggacgagaggaacaaagccagatcaatgagtgacccaccagagcattctactaaccctcaatctcaccgcgagaagcaacgaaggcagtctgagcaagttggaagtccaacatgtccagttaactctcaaggtgttcccagtggggctttttctcctaatagcgtaacatcaagacgggacttggctgcaatgagcttgggcaatccttcagaaagttacgatgtacttcctcctccaagatctcgggatacttatgacaatttaccaagtccacagaaagttcagagggatcagggaccacaggacaattatgacaatgtcccactccctcgagcacttcaagaacgcttggctagtccttcgtctccaagagcaaaatcacagcatcacttgtcgcccagacaggacgattatgatgcagtgcctgctccacgaccactctcccaggcaagtaatagatcatcacaggaggtgtatgatatcgttcctcctccaaggccaacgtccactagtgatgatctatatgatgttcctcctgtagtaaggacaacggaaaatgaaaactatgacattgttccccctgctaggccaacctctactaatagtgacgcatacgatggtcaaggtctctatgatgttcctccaggttttggaagagcacagcagcaggacgactatgacattgttcccccggctaggccaacgtctgcttatagtgacgcacatgatgatcaaggtctctatgatgttcctccaggtttgggaaaaagacaacagcaggaagactatgacattgttcctcctccaaggcgaagatcttataatgaatcacaagatggccaaagtctctataatgttcctccagctggcagggtacaagaacaggaaaattatgactttgttcctcagccacggccagtgtcttcttgcagtgacactccagatggtcaaggcctttacgatgttcctccttttggaaggccatcggagcaagccaattacgattttccaccttccctgcgcagacatagatatattgaacaggatgcttcaaaggaaacttacgatgttgtaccaataccacggcctacttcacaagaagtttatgatgttgttccaccagctaggccagcaagaataccaagcgactctgggagcacaccaagggatcctcgtttttctgatgtgtataatacccatctcagtgaacagtctggtgcagatgtgtaccactgggtcccacctccaatccctacccctaaccaacacagtaaagacacctatgacactctgccaaaaaccactcgtcctgttagtgcagattctggactaaatgcttcattttcaagcatctgctcgttgaagtcagagggtcacgatgatcgatacgatgcaccattgccaccagttccaagcgagaaaagagattcaggatctttgagtgatgagacacctgattatgatcaagaccttgagggaatttatgacaagccacccagtgtggcatctagaaactcaatttatgatgtcccaccgcctatccagaagagtgactatgatgtcccaccaacatactcagatgaaatctatgatgttcctcccgacacctctgatgacatctatgatgtgccaccacaacaccctaatcaaggtcgcttaaacagtccgagtggaagcgcagggattccagcagttgatcgttctacgaaacccccaccccaggtcaacagagccacaaagccaaaggcaccaacacaagaccacagctactgtaacatggcaccaccagttaatcgggaaagcaaatacaaaagaagtaccatgcctcaaccagagcccagctatataaattgtggaactccgccacaacgtccccagaacctgcctcttgtaaagatcctaaatggaaacccttatgtagggtctttgcccaatcagcgaagtacatgggccccaaaagttgaagaggatgcagaatattgcataatggaaccaccgacaagatcagaatttacgcgatgctacagtctggaaaaagatgagaggcaaaaatcgccagttactgatcagtgttatgaagacatgtcgaccatgaggaccaagaggctctctggaacaaagagcagttcgtcatcgtcatcctctttaggtgatgatgatgcatacacacaaatgactcctgctcgtgccgggtcgacaccaatacaggtggaacagagacaaagaagagatcttctatatgcagaagttgaaatagctgaaagtccccacctgaaaacacagcctgctccttcccccaggagagcaaacactcattatacctatataaatgaggagtctaccagagcgcttttgcaaacctcttatgcacgaagagaaaatcgctga

Transcript

evm.model.Ap5.2105

ATGGCGGATGAAGATGTTTTGATTTCAGGATACCTTCGAAAATCGCCTCCAGAAACGAAATTCAAAGTCAGCACGTGGCAGAGACGTTACTTTGTTTTGCATGCAAACAAAAAGCTACATTATTACAAGAATGACAAGGAGAAGCGTCCTGTGAAAGATCCAATAAACTTGGCATTTTGCAAGTCTGTTGAGTCGCATTTGGATCACTATAAATTCAAGCATGTTTTCAGTATTGTCACTGAGCAGCGGACATATTATCTTGTGGCAGAGTCACCAGGAGATATGGAGAATTGGGTGGAAAAACTTTGTGATGTGTGTGGCTTTAGAAGAACAGACGGCAGAACCTCACCAGATTTGAACGGAACTCAAAAAACTGTATATCAAACTTCTCCAGCTAATTCTCGCCCAATTGCAGCTGCCAAACATCGCACAATGAGCCCTGTTGGATCTCAGTCTAGTGTTTCGTCATCAGGTTCAAGTGTCACGTCACCAACTAGCCCTTGTCCGCTTTCCATTCCTAAACACATCATGGACGAGAGGAACAAAGCCAGATCAATGAGTGACCCACCAGAGCATTCTACTAACCCTCAATCTCACCGCGAGAAGCAACGAAGGCAGTCTGAGCAAGTTGGAAGTCCAACATGTCCAGTTAACTCTCAAGGTGTTCCCAGTGGGGCTTTTTCTCCTAATAGCGTAACATCAAGACGGGACTTGGCTGCAATGAGCTTGGGCAATCCTTCAGAAAGTTACGATGTACTTCCTCCTCCAAGATCTCGGGATACTTATGACAATTTACCAAGTCCACAGAAAGTTCAGAGGGATCAGGGACCACAGGACAATTATGACAATGTCCCACTCCCTCGAGCACTTCAAGAACGCTTGGCTAGTCCTTCGTCTCCAAGAGCAAAATCACAGCATCACTTGTCGCCCAGACAGGACGATTATGATGCAGTGCCTGCTCCACGACCACTCTCCCAGGCAAGTAATAGATCATCACAGGAGGTGTATGATATCGTTCCTCCTCCAAGGCCAACGTCCACTAGTGATGATCTATATGATGTTCCTCCTGTAGTAAGGACAACGGAAAATGAAAACTATGACATTGTTCCCCCTGCTAGGCCAACCTCTACTAATAGTGACGCATACGATGGTCAAGGTCTCTATGATGTTCCTCCAGGTTTTGGAAGAGCACAGCAGCAGGACGACTATGACATTGTTCCCCCGGCTAGGCCAACGTCTGCTTATAGTGACGCACATGATGATCAAGGTCTCTATGATGTTCCTCCAGGTTTGGGAAAAAGACAACAGCAGGAAGACTATGACATTGTTCCTCCTCCAAGGCGAAGATCTTATAATGAATCACAAGATGGCCAAAGTCTCTATAATGTTCCTCCAGCTGGCAGGGTACAAGAACAGGAAAATTATGACTTTGTTCCTCAGCCACGGCCAGTGTCTTCTTGCAGTGACACTCCAGATGGTCAAGGCCTTTACGATGTTCCTCCTTTTGGAAGGCCATCGGAGCAAGCCAATTACGATTTTCCACCTTCCCTGCGCAGACATAGATATATTGAACAGGATGCTTCAAAGGAAACTTACGATGTTGTACCAATACCACGGCCTACTTCACAAGAAGTTTATGATGTTGTTCCACCAGCTAGGCCAGCAAGAATACCAAGCGACTCTGGGAGCACACCAAGGGATCCTCGTTTTTCTGATGTGTATAATACCCATCTCAGTGAACAGTCTGGTGCAGATGTGTACCACTGGGTCCCACCTCCAATCCCTACCCCTAACCAACACAGTAAAGACACCTATGACACTCTGCCAAAAACCACTCGTCCTGTTAGTGCAGATTCTGGACTAAATGCTTCATTTTCAAGCATCTGCTCGTTGAAGTCAGAGGGTCACGATGATCGATACGATGCACCATTGCCACCAGTTCCAAGCGAGAAAAGAGATTCAGGATCTTTGAGTGATGAGACACCTGATTATGATCAAGACCTTGAGGGAATTTATGACAAGCCACCCAGTGTGGCATCTAGAAACTCAATTTATGATGTCCCACCGCCTATCCAGAAGAGTGACTATGATGTCCCACCAACATACTCAGATGAAATCTATGATGTTCCTCCCGACACCTCTGATGACATCTATGATGTGCCACCACAACACCCTAATCAAGGTCGCTTAAACAGTCCGAGTGGAAGCGCAGGGATTCCAGCAGTTGATCGTTCTACGAAACCCCCACCCCAGGTCAACAGAGCCACAAAGCCAAAGGCACCAACACAAGACCACAGCTACTGTAACATGGCACCACCAGTTAATCGGGAAAGCAAATACAAAAGAAGTACCATGCCTCAACCAGAGCCCAGCTATATAAATTGTGGAACTCCGCCACAACGTCCCCAGAACCTGCCTCTTGTAAAGATCCTAAATGGAAACCCTTATGTAGGGTCTTTGCCCAATCAGCGAAGTACATGGGCCCCAAAAGTTGAAGAGGATGCAGAATATTGCATAATGGAACCACCGACAAGATCAGAATTTACGCGATGCTACAGTCTGGAAAAAGATGAGAGGCAAAAATCGCCAGTTACTGATCAGTGTTATGAAGACATGTCGACCATGAGGACCAAGAGGCTCTCTGGAACAAAGAGCAGTTCGTCATCGTCATCCTCTTTAGGTGATGATGATGCATACACACAAATGACTCCTGCTCGTGCCGGGTCGACACCAATACAGGTGGAACAGAGACAAAGAAGAGATCTTCTATATGCAGAAGTTGAAATAGCTGAAAGTCCCCACCTGAAAACACAGCCTGCTCCTTCCCCCAGGAGAGCAAACACTCATTATACCTATATAAATGAGGAGTCTACCAGAGCGCTTTTGCAAACCTCTTATGCACGAAGAGAAAATCGCTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9EQH1	GRB2-associated-binding protein 2 OS=Rattus norvegicus OX=10116 GN=Gab2 PE=1 SV=2
Q9Z1S8	GRB2-associated-binding protein 2 OS=Mus musculus OX=10090 GN=Gab2 PE=1 SV=2
Q2WGN9	GRB2-associated-binding protein 4 OS=Homo sapiens OX=9606 GN=GAB4 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005939 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR046355 all species →	Family	GRB2-associated-binding protein 1-4-like	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45960 all species →	GRB2-ASSOCIATED-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap5.2105.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.